View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_58 (Length: 296)

Name: NF2312_low_58
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_58
NF2312_low_58
[»] chr4 (2 HSPs)
chr4 (15-223)||(42265410-42265625)
chr4 (139-191)||(24225502-24225554)
[»] chr5 (1 HSPs)
chr5 (151-192)||(24136914-24136955)
[»] chr2 (1 HSPs)
chr2 (142-191)||(38584131-38584180)
[»] chr1 (1 HSPs)
chr1 (142-191)||(19825112-19825161)
[»] chr7 (1 HSPs)
chr7 (150-190)||(24487088-24487128)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 42265625 - 42265410
Alignment:
Q  15 gggagcaggataatattgacttgaataactattttgaggattcagaaatgtatctgctaaatgttggtgtgtttgatgaacaccaattttcaatcagaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||     
T  42265625 gggagcaggataatattgacttgaataactattttgaggattcagaaatgtatctgccaaatgttggtgtgtttgatgaacaccaattttcagtcagaag 42265526  T
Q  115 aatcaaaaggaggagaaacaatctaatcaaaccaccaaattgtgagcacttgaatcaccaaacagccaaattgtgagactcg-------aaacaaccaaa 207  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||    
T  42265525 aatcaaaaagaagagaaacaatctaatcaaaccaccaaattgtgagcacttgaatcaccaaacaaccaaattgtgagactcgactcaccaaacaaccaaa 42265426  T
Q  208 cagtgagcacttgatc 223  Q
    ||||||||||||||||    
T  42265425 cagtgagcacttgatc 42265410  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 191
Target Start/End: Complemental strand, 24225554 - 24225502
Alignment:
Q  139 aatcaaaccaccaaattgtgagcacttgaatcaccaaacagccaaattgtgag 191  Q
    |||||||| |||||||||| |||||| || |||||||||| ||||||||||||    
T  24225554 aatcaaacaaccaaattgtaagcactcgattcaccaaacaaccaaattgtgag 24225502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Complemental strand, 24136955 - 24136914
Alignment:
Q  151 aaattgtgagcacttgaatcaccaaacagccaaattgtgaga 192  Q
    |||||||||||||| || |||||||||| |||||||||||||    
T  24136955 aaattgtgagcactcgactcaccaaacaaccaaattgtgaga 24136914  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 38584131 - 38584180
Alignment:
Q  142 caaaccaccaaattgtgagcacttgaatcaccaaacagccaaattgtgag 191  Q
    ||||| |||||||||||||||||| | |||||||||  ||||||||||||    
T  38584131 caaacaaccaaattgtgagcacttaactcaccaaactaccaaattgtgag 38584180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Original strand, 19825112 - 19825161
Alignment:
Q  142 caaaccaccaaattgtgagcacttgaatcaccaaacagccaaattgtgag 191  Q
    ||||| ||||||||||||||||| || || ||||||| ||||||||||||    
T  19825112 caaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgag 19825161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 24487088 - 24487128
Alignment:
Q  150 caaattgtgagcacttgaatcaccaaacagccaaattgtga 190  Q
    ||||||||||| |||||| |||||||||| |||||||||||    
T  24487088 caaattgtgagaacttgactcaccaaacaaccaaattgtga 24487128  T

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