View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_59 (Length: 295)

Name: NF2312_low_59
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_59
NF2312_low_59
[»] chr4 (5 HSPs)
chr4 (77-285)||(27267572-27267780)
chr4 (77-285)||(29633985-29634193)
chr4 (75-285)||(27262797-27263007)
chr4 (77-285)||(29642229-29642441)
chr4 (77-253)||(56525448-56525614)
[»] scaffold0003 (2 HSPs)
scaffold0003 (76-285)||(292693-292902)
scaffold0003 (77-285)||(297474-297682)
[»] chr6 (3 HSPs)
chr6 (76-285)||(28271109-28271318)
chr6 (76-285)||(28349859-28350068)
chr6 (77-285)||(28354628-28354836)
[»] chr8 (2 HSPs)
chr8 (77-285)||(20753029-20753237)
chr8 (77-285)||(20757797-20758009)
[»] chr7 (1 HSPs)
chr7 (77-285)||(7553575-7553783)
[»] chr1 (1 HSPs)
chr1 (76-285)||(49545115-49545323)
[»] chr2 (1 HSPs)
chr2 (16-76)||(44145547-44145608)


Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 77 - 285
Target Start/End: Original strand, 27267572 - 27267780
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 176  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27267572 tgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 27267671  T
Q  177 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27267672 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 27267771  T
Q  277 cctcctatg 285  Q
    |||||||||    
T  27267772 cctcctatg 27267780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 29634193 - 29633985
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 176  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29634193 tgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 29634094  T
Q  177 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29634093 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 29633994  T
Q  277 cctcctatg 285  Q
    |||||||||    
T  29633993 cctcctatg 29633985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 75 - 285
Target Start/End: Original strand, 27262797 - 27263007
Alignment:
Q  75 tctgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaatt 174  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27262797 tctgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaatt 27262896  T
Q  175 agaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaa 274  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27262897 agaatttaaagggagaataagtagcatttatagacggaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaa 27262996  T
Q  275 tacctcctatg 285  Q
    |||||||||||    
T  27262997 tacctcctatg 27263007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 29642441 - 29642229
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaatt----gtaattagctgtattagaa 172  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  29642441 tgttgaatattagcacagaatcaatcagattttgtgctgtttaacttattataactggttgtaaatactaattaattaattgtaattagctgtattagaa 29642342  T
Q  173 ttagaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctata 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29642341 ttagaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctata 29642242  T
Q  273 aatacctcctatg 285  Q
    |||||||||||||    
T  29642241 aatacctcctatg 29642229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 77 - 253
Target Start/End: Original strand, 56525448 - 56525614
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 176  Q
    ||||||||||||||||||||||||| ||||| |||  |||||||||||||          ||||||||||||||||||| | ||| ||||||||||||||    
T  56525448 tgttgaatattagcacagaatcaatcagattctgtcatgtttgacttatt----------gtaaatactaattaattgttaatagttgtattagaattag 56525537  T
Q  177 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgccta 253  Q
     ||||||||||||||||||||||||| |||||||||||||||| |  ||||||||||| |||||||||| |||||||    
T  56525538 catttaaagggagaataagtagcattcatagacagaataatttctcctattttctggcaagactagcacactgccta 56525614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 76 - 285
Target Start/End: Original strand, 292693 - 292902
Alignment:
Q  76 ctgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaatta 175  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  292693 ctgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagttgtattagaatta 292792  T
Q  176 gaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  292793 gaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaat 292892  T
Q  276 acctcctatg 285  Q
    ||||||||||    
T  292893 acctcctatg 292902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 77 - 285
Target Start/End: Original strand, 297474 - 297682
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 176  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  297474 tgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagttgtattagaattag 297573  T
Q  177 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  297574 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 297673  T
Q  277 cctcctatg 285  Q
    |||||||||    
T  297674 cctcctatg 297682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 76 - 285
Target Start/End: Original strand, 28271109 - 28271318
Alignment:
Q  76 ctgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaatta 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28271109 ctgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaatta 28271208  T
Q  176 gaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28271209 gaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagaatagcactctgcctacagtcccttgtattctataaat 28271308  T
Q  276 acctcctatg 285  Q
    ||||||||||    
T  28271309 acctcctatg 28271318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 76 - 285
Target Start/End: Original strand, 28349859 - 28350068
Alignment:
Q  76 ctgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaatta 175  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28349859 ctgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaatta 28349958  T
Q  176 gaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28349959 gaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagaatagcactctgcctacagtcccttgtattctataaat 28350058  T
Q  276 acctcctatg 285  Q
    ||||||||||    
T  28350059 acctcctatg 28350068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 77 - 285
Target Start/End: Original strand, 28354628 - 28354836
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 176  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28354628 tgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 28354727  T
Q  177 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28354728 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagaatagcactctgcctacagtcccttgtattctataaata 28354827  T
Q  277 cctcctatg 285  Q
    |||||||||    
T  28354828 cctcctatg 28354836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 20753237 - 20753029
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 176  Q
    ||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20753237 tgttgaatattagcacataatcaatcatattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 20753138  T
Q  177 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20753137 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctacctacagtcccttgtattctataaata 20753038  T
Q  277 cctcctatg 285  Q
    |||||||||    
T  20753037 cctcctatg 20753029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 77 - 285
Target Start/End: Complemental strand, 20758009 - 20757797
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttatta----taactggttgtaaatactaattaattgtaattagctgtattagaa 172  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||    
T  20758009 tgttgaatattagcacagaatcaatcagattttgtgctgtttgacttattaattataactggttgtaaatactaattaattgtaattagctgtattagaa 20757910  T
Q  173 ttagaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctata 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20757909 ttagaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctata 20757810  T
Q  273 aatacctcctatg 285  Q
    |||||||||||||    
T  20757809 aatacctcctatg 20757797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 77 - 285
Target Start/End: Original strand, 7553575 - 7553783
Alignment:
Q  77 tgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 176  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7553575 tgttgaatattagcacagaatcaatcaaattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaattag 7553674  T
Q  177 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaata 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||    
T  7553675 aatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagtactatgcctacggtcccttgtattctataaata 7553774  T
Q  277 cctcctatg 285  Q
    |||||||||    
T  7553775 cctcctatg 7553783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 76 - 285
Target Start/End: Complemental strand, 49545323 - 49545115
Alignment:
Q  76 ctgttgaatattagcacagaatcaattagattttgtgctgtttgacttattataactggttgtaaatactaattaattgtaattagctgtattagaatta 175  Q
    |||||||||||||||||  ||||||| |||||||||| |||||||||||||||||||| |||||||||| ||| |||||| ||||| |||||||||||||    
T  49545323 ctgttgaatattagcaccaaatcaatcagattttgtgttgtttgacttattataactgattgtaaataccaat-aattgtgattagttgtattagaatta 49545225  T
Q  176 gaatttaaagggagaataagtagcatttatagacagaataatttgttttattttctggctagactagcactctgcctacagtcccttgtattctataaat 275  Q
    || ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||||    
T  49545224 gactttaaagggagaataagtagcatttataggctgaataatttgttttattttctggccagactagcactctacctatagtcacttgtattctataaat 49545125  T
Q  276 acctcctatg 285  Q
    |||| |||||    
T  49545124 accttctatg 49545115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 44145608 - 44145547
Alignment:
Q  16 gttataatcttcataactaaaag-tgagctgaattagaatcaagtacttactttgcacactc 76  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  44145608 gttataatcttcataactaaaaggtgagctgaattagaatcaggtacttactttgcacactc 44145547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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