View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_6 (Length: 633)
Name: NF2312_low_6
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 5 - 617
Target Start/End: Complemental strand, 53459938 - 53459323
Alignment:
| Q |
5 |
gacagagatgaagaacagaaaaaacgacggaaatttgcaaatccagccattcatttcatatgtgcactcttctgtcgtagaggtaatcttaagtgtttga |
104 |
Q |
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| T |
53459938 |
gacagagaggaagaacagaaaaaacgacggaaattagcaaatccagccattcatttcatatgtgcactcttctgtcgtagaggtaatcttaagtgtttga |
53459839 |
T |
|
| Q |
105 |
aaagctttcatacagatgatttaacatgtatgtttcaagcttaaaggatcgaactaaacaaacttcgtaaaattatatcaacatttttcaagttttcatg |
204 |
Q |
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| T |
53459838 |
aaagctttcatacagatgatttaacatgtatgtttcaagcttataggatcgaactaaacaaacttcgtaaaattatatcgacatttttcaagttttcatg |
53459739 |
T |
|
| Q |
205 |
tcatttt--gtatagggacattgcctccaagtaaacccatgtttgaagctaaaaccgatgtgactaacagatttaaggagtgcatcaaccataaaatcga |
302 |
Q |
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| T |
53459738 |
tcattttttgtatagggacattgcctccaagtaaacccatgtttgaagctaaaaccgatgtgactaacagatttaaggagtgcatcaaccataaaatcga |
53459639 |
T |
|
| Q |
303 |
agtccattttcctatagaaaaatacttttactctaaacgtactttgccaactttaaacctgaaatgcccaaacatgcaattaatagtactcacaaagagc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53459638 |
agtccattttcctatagaaaaatacttttactctaaacttactttgccaactttaaacctgaaatgcccaaacatgcaattaatagtactcacaaagagc |
53459539 |
T |
|
| Q |
403 |
tgacaaaaagattagcattacatgttctgccaattaccaattagtgaatcccctaacaagcatggggaggaataggcctattgaatcacaggattatccc |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||| |
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| T |
53459538 |
tgacaaaaagattagcattacatgttctgccaattaccaattagtgaatcccctaacaagcagggagaggaataggcctattgagtcacaggattatccc |
53459439 |
T |
|
| Q |
503 |
tacaaatcatttttaatcacataattaaagaaaccgcatgggttgat-caatatgcacataaaatacacattgcagagaaagaatttgcacccacagaaa |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53459438 |
tacaaatcatttttaatcacataattaaagaaaccgcatgggttgatccaatatgcacataaaatacacattgcagagaaagaatttgcacccacagaaa |
53459339 |
T |
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| Q |
602 |
cagatattgcacataa |
617 |
Q |
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|||||||||||||||| |
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| T |
53459338 |
cagatattgcacataa |
53459323 |
T |
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