View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_61 (Length: 286)
Name: NF2312_low_61
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_61 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 24 - 286
Target Start/End: Complemental strand, 20816876 - 20816614
Alignment:
| Q |
24 |
acccaactttgttaaggaaccttcatcatccattgcacccaagtaattcaacacctccaaagcgcgcattaaggtttctggtgcaggagggtccataaag |
123 |
Q |
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| T |
20816876 |
acccaactttgttaagttaccttcatcatccattgcacccaagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaag |
20816777 |
T |
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| Q |
124 |
tcaaaatgcactaaatcgtctatacccaatttcttcaaagtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagat |
223 |
Q |
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| T |
20816776 |
tcaaaatgtactaaatcgtctatacccaatttcttcaaagtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagat |
20816677 |
T |
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| Q |
224 |
cattattgaaacttctttccgtataaagtctaaagcatttccctggttgtgttcttccagcac |
286 |
Q |
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| T |
20816676 |
cattattgaaacttctttccgtataaagtctaaagcatttccctggttgtgttcttccagcac |
20816614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 38779265 - 38779531
Alignment:
| Q |
20 |
tctcacccaactttgttaaggaaccttcatcatccattgcacccaagtaattcaacacctccaaagcgcgcattaaggtttctggtgcaggagggtccat |
119 |
Q |
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| T |
38779265 |
tctcaccaagctttgttaagttaccttcatcatccagtgcacccaagtaattcaacacttccaaagcacgcatcaaggtttcaggggcaggagggtccat |
38779364 |
T |
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| Q |
120 |
aaagtcaaaatgcactaaatcgtctatacccaatttcttcaaagtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctga |
219 |
Q |
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| T |
38779365 |
gaagtcaaaatgaactaaatcatctatacccagtttcttcaatgtaagaactgtgttggcaagattagatctcaaaatttcaggataggtctgcggctga |
38779464 |
T |
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| Q |
220 |
agatcattattgaaacttctttccgtataaagtctaaagcatttccctggttgtgttcttccagcac |
286 |
Q |
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| T |
38779465 |
agatcattattgaaacttctttcggtataaagtctaaagcatttccccggctgagttcttccagcac |
38779531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 33388224 - 33388490
Alignment:
| Q |
20 |
tctcacccaactttgttaaggaaccttcatcatccattgcacccaagtaattcaacacctccaaagcgcgcattaaggtttctggtgcaggagggtccat |
119 |
Q |
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||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| || |||||||||||||| |
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| T |
33388224 |
tctcacccagctttgttaagttaccttcatcatcaattgcacctaagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccat |
33388323 |
T |
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| Q |
120 |
aaagtcaaaatgcactaaatcgtctatacccaatttcttcaaagtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctga |
219 |
Q |
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||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
33388324 |
gaagtcaaaatgaactaaatcatctatacccaatttcttcaatgtaagaaccgtgtttgcaagattagatctcaaaatttcaggataggtctgcggctga |
33388423 |
T |
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| Q |
220 |
agatcattattgaaacttctttccgtataaagtctaaagcatttccctggttgtgttcttccagcac |
286 |
Q |
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||||||||| |||||||| |||| ||||| |||||| |||||||||| ||||| |||||||| |||| |
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| T |
33388424 |
agatcattactgaaacttatttcggtatagagtctatagcatttccccggttgagttcttccggcac |
33388490 |
T |
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