View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_64 (Length: 279)
Name: NF2312_low_64
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 23608642 - 23608388
Alignment:
| Q |
20 |
agtacattatgtccctcactctaaaatatttgatcatgctcgactctaaaatttacttccaaagcnnnnnnncgaaataaaatgacagtttcttacatag |
119 |
Q |
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| T |
23608642 |
agtacattatgtccctcactctaaaatatttgatcatgctcgactctaaaatttacttccaaagcaaaaaaacgaaataaaatgacagtttcttacatag |
23608543 |
T |
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| Q |
120 |
acgtgtccctcctaatcctcttcatcaactagacaataactcttgaacaatcccctagttttgccaaagttactgcttctatctgaaaaccatttcaaaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23608542 |
acgtgtccctcctaatcctcttcatcaactagacaataactcttgaacaatcccctagttttgccaaagttactgcttctatctgaaaaccatttcaaaa |
23608443 |
T |
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| Q |
220 |
ccaaatattagtaatcacaacactaatattacaaagttctattattcttctcact |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23608442 |
ccaaatattagtaatcacaacactaatattacaaagttctattattcttatcact |
23608388 |
T |
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