View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_7 (Length: 593)
Name: NF2312_low_7
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Original strand, 32186770 - 32187336
Alignment:
| Q |
1 |
agctacttatgattagtgacatcaattattgttaagagtttccaattatcctcaaatattgatccactagtacatcatatgaaactcttcttcaccctaa |
100 |
Q |
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| T |
32186770 |
agctacttatgattagtgacatcaattattttta-gagtttccaattatcctcaaatattgatccactagtacatcatatgaaactcttcttcaccctaa |
32186868 |
T |
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| Q |
101 |
acacgtcatttgtgaaatatagtagttgattactataaccactaatnnnnnnngttgaaataacaacgaaaattttagatgatgacaacaacttacaaaa |
200 |
Q |
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| T |
32186869 |
acacgtcatttgtgaaatatagtagttgattactataaccactaataaaaaa-gatgaaataacaacgaaaattttagatgatgacaacaacttacaaaa |
32186967 |
T |
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| Q |
201 |
atcttgtaaggatattttcagttcaatgaaaaatctggcttcaaatatcaacttgcatgctttcatggctaaaatcaaaacactatttgcataaatggac |
300 |
Q |
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| T |
32186968 |
atcttgtaaggatattttcagttcaatgaaaaatctggcttcaaatatcaacttgcatgctttcatggctaaaatcaaaacactatttgcataaatggac |
32187067 |
T |
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| Q |
301 |
tagtctattttagggcaacaagagtttttgtgttgcggcgataataggggcaacaagaaataatttagggc-ttactttagaccctttcctaaaaatatc |
399 |
Q |
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| T |
32187068 |
tagtctattttagggcaacaagagtttttgtgttgcggcgataataggggcaacaagaaataatttagggctttactttagaccctttcctaaaaatatc |
32187167 |
T |
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| Q |
400 |
tatatctagata--ttttttcattgtgaaaatactataccatttg-actgaagtatctttggaactttataaaaatagaatattgtgtgtgtgcatgcat |
496 |
Q |
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| T |
32187168 |
tatatctagatattttttttcattgtgaaaatactataccatttgaactgaagtatctttggaactttatacaaatagaatattgtgtgtatgcatgcat |
32187267 |
T |
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| Q |
497 |
gtatagtctgaatgtttacatatgaacatttagcaacaatcttttgttgctatctgtgatgagattcta |
565 |
Q |
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| T |
32187268 |
gtataatctgaatgtttacatatgaacatttagcaacaatcgtttgttgctatctgtgatgagattcta |
32187336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 32186322 - 32186412
Alignment:
| Q |
182 |
atgacaacaacttacaaaaatcttgtaaggatattttcagttcaatgaaaaatctggcttcaaatatcaacttgcatgctttcatggctaa |
272 |
Q |
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| T |
32186322 |
atgacaacaacttacaaagatcttttaaggatattttaagttcaaataaatatctgtctaaaaatatcaacttccatgctttcatgactaa |
32186412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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