View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_73 (Length: 268)
Name: NF2312_low_73
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_73 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 26903925 - 26903667
Alignment:
| Q |
1 |
aagaaaaaatctatcaaccaccactctctcatatcatctataaaataaagctcttgtcttgtgggaaagataaaactcacaccaccaagcaactccttgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
26903925 |
aagaaaaaatctatcaaccaccactctctcatatcatctataaaataaagc-----tgttgtgggaaagataaaactcacaccaccaagcaactccttgg |
26903831 |
T |
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| Q |
101 |
tatatca-ttacatttgtaaagaactaaaacacaatgggttctttagagaaaaaagagaacaaacctcatgttgtgtgtgttccatttccagcacaaggt |
199 |
Q |
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| T |
26903830 |
tatatcatttacatttgtaaagaactaaaacacaatgggttctttagggaaaaaagagaacaaacctcatgttgtgtgtgttccatttccagcacaaggt |
26903731 |
T |
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| Q |
200 |
cacataaatccaatgctcaaacttgcaaaacttcttcatttcaaaagtgattttcatgtcacct |
263 |
Q |
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| T |
26903730 |
cacataaatccaatgctcaaacttgcaaaacttcttcatttcaaaagtgattttcatgtcacct |
26903667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 26676577 - 26676479
Alignment:
| Q |
165 |
ctcatgttgtgtgtgttccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcatttcaaaagtgattttcatgtcacct |
263 |
Q |
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| T |
26676577 |
ctcatgttgtgtgtatcccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcattttaaaggtggttttcatgtcacct |
26676479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 165 - 263
Target Start/End: Complemental strand, 26948185 - 26948087
Alignment:
| Q |
165 |
ctcatgttgtgtgtgttccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcatttcaaaagtgattttcatgtcacct |
263 |
Q |
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| T |
26948185 |
ctcatgttgtgtgtatcccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcattttaaaggtggttttcatgtcacct |
26948087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 164 - 263
Target Start/End: Original strand, 88901 - 89000
Alignment:
| Q |
164 |
cctcatgttgtgtgtgttccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcatttcaaaagtgattttcatgtcacct |
263 |
Q |
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| T |
88901 |
cctcatgttgtgtgtgtcccatatccagcacaaggtcacataaacccaatgctgaacatagcaaaacttcttcatttcaaaggtggttttcatgtcacct |
89000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 263
Target Start/End: Complemental strand, 43519682 - 43519601
Alignment:
| Q |
182 |
ccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcatttcaaaagtgattttcatgtcacct |
263 |
Q |
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| T |
43519682 |
ccatttccagcacaagctcacataaacccaatgctgaaactagcaaagcttcttcatttcaaaggtggttttcatgtcacct |
43519601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 216
Target Start/End: Complemental strand, 30841844 - 30841815
Alignment:
| Q |
187 |
tccagcacaaggtcacataaatccaatgct |
216 |
Q |
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| T |
30841844 |
tccagcacaaggtcacataaatccaatgct |
30841815 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 37403662 - 37403591
Alignment:
| Q |
167 |
catgttgtgtgtgttccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaacttcttcat |
238 |
Q |
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| T |
37403662 |
catgtggtttgtgttccactcccagcacaaggtcacataaacccaatgctaaaactagcaaaactccttcat |
37403591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 1349509 - 1349556
Alignment:
| Q |
182 |
ccatttccagcacaaggtcacataaatccaatgctcaaacttgcaaaa |
229 |
Q |
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| T |
1349509 |
ccatttccaacacaaggtcacataaatccatttctcaaactggcaaaa |
1349556 |
T |
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