View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_74 (Length: 264)

Name: NF2312_low_74
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_74
NF2312_low_74
[»] chr5 (5 HSPs)
chr5 (8-245)||(36845574-36845808)
chr5 (128-231)||(6160139-6160237)
chr5 (20-85)||(6160129-6160194)
chr5 (152-189)||(36856197-36856234)
chr5 (152-204)||(36856106-36856158)
[»] chr6 (6 HSPs)
chr6 (20-203)||(6681938-6682120)
chr6 (59-203)||(6771256-6771394)
chr6 (107-195)||(6682044-6682131)
chr6 (71-146)||(6765037-6765112)
chr6 (152-202)||(6670987-6671037)
chr6 (22-85)||(6771311-6771375)
[»] chr3 (2 HSPs)
chr3 (23-202)||(46524612-46524795)
chr3 (152-201)||(2942437-2942486)
[»] scaffold0299 (2 HSPs)
scaffold0299 (71-201)||(17579-17703)
scaffold0299 (143-201)||(17355-17413)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 245
Target Start/End: Original strand, 36845574 - 36845808
Alignment:
Q  8 gaaagaattgaattgaattgaatagttggagcttagctctcaaccatttaatatacatttaccacaatacaaacttgattttctaatttcaagcctctca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36845574 gaaagaattgaattgaattgaatagttggagcttagctctcaaccatttaatatacatttacaacaatacaaacttgattttctaatttcaagcctctca 36845673  T
Q  108 aaaatgagacttaaattgaatagttggagcttaggctctcaaccattgaatatatattcacaacaacacaaaattgaatctcttattttaagagaaatga 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  36845674 aaaatgagacttaaattgaatagttggagcttaggctctcaaccattgaatatatattcacaacaacacaaaattgaatctcttattttaagagaaatg- 36845772  T
Q  208 ataataataaggctattcctaacccctaacctatgtat 245  Q
      ||||||||||||||||||||||||||||||||||||    
T  36845773 --aataataaggctattcctaacccctaacctatgtat 36845808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 128 - 231
Target Start/End: Original strand, 6160139 - 6160237
Alignment:
Q  128 tagttggagcttaggctctcaaccattgaatatatattcacaacaacacaaaattgaatctcttattttaagagaaatgaataataataaggctattcct 227  Q
    ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||    
T  6160139 tagtttgagcttag-ctctcaaccattgaatatacattcacaacaacacaaaattgaatctcttattttaagag-aatg---aataataaggctattcct 6160233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 6160129 - 6160194
Alignment:
Q  20 ttgaattgaatagttggagcttagctctcaaccatttaatatacatttaccacaatacaaacttga 85  Q
    ||||||||  ||||| |||||||||||||||||||| |||||||||| || |||| ||||| ||||    
T  6160129 ttgaattgtgtagtttgagcttagctctcaaccattgaatatacattcacaacaacacaaaattga 6160194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 189
Target Start/End: Original strand, 36856197 - 36856234
Alignment:
Q  152 attgaatatatattcacaacaacacaaaattgaatctc 189  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  36856197 attgaatgtatattcacaacaatacaaaattgaatctc 36856234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 36856106 - 36856158
Alignment:
Q  152 attgaatatatattcacaacaacacaaaattgaatctcttattttaagagaaa 204  Q
    |||||||||| ||| ||||||| |||||||||| | |||| ||||||||||||    
T  36856106 attgaatatacattaacaacaatacaaaattgattatcttgttttaagagaaa 36856158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 6682120 - 6681938
Alignment:
Q  20 ttgaattgaatagttggagcttagctctcaaccatttaatatacatttaccacaatacaaacttgattttctaatttcaagcctctcaaaaatgagactt 119  Q
    ||||||||||||||  ||||||||||||||| |||| |||||||||| || |||||||||| |||| | |||||||||||| |||| |||| ||||||||    
T  6682120 ttgaattgaatagtcagagcttagctctcaatcattgaatatacattcacaacaatacaaaattgaatctctaatttcaagtctcttaaaa-tgagactt 6682022  T
Q  120 aaattgaatagttggagcttaggctctcaaccattgaatatatattcacaacaacacaaaattgaatctcttattttaagagaa 203  Q
     |||||||| |||||||||| | |||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||    
T  6682021 gaattgaatggttggagctttgcctctcaaccattgaatatacttttacaacaacacaaaattgaatctcttattttaagagaa 6681938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 203
Target Start/End: Original strand, 6771256 - 6771394
Alignment:
Q  59 tatacatttaccacaatacaaacttgattttctaatttcaagcctctcaaaaatgagacttaaattgaatagttggagcttaggctctcaaccattgaat 158  Q
    |||||||| || | |||||||| ||||||||||||||||||| |||| |||| |||||     |||||||| ||||||||||| ||||||||||||||||    
T  6771256 tatacattcacaaaaatacaaaattgattttctaatttcaagtctcttaaaa-tgaga-----attgaataattggagcttagcctctcaaccattgaat 6771349  T
Q  159 atatattcacaacaacacaaaattgaatctcttattttaagagaa 203  Q
    |||  || | |||||||||||||||||||||||||||||||||||    
T  6771350 atacttttaaaacaacacaaaattgaatctcttattttaagagaa 6771394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 6682131 - 6682044
Alignment:
Q  107 aaaaatgagacttaaattgaatagttggagcttaggctctcaaccattgaatatatattcacaacaacacaaaattgaatctcttattt 195  Q
    ||||| ||||||| |||||||||||  ||||||| |||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||    
T  6682131 aaaaaagagacttgaattgaatagtcagagctta-gctctcaatcattgaatatacattcacaacaatacaaaattgaatctctaattt 6682044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 6765037 - 6765112
Alignment:
Q  71 acaatacaaacttgattttctaatttc-aagcctctcaaaaatgagacttaaattgaatagttggagcttaggctct 146  Q
    |||||||||| ||||||||||||| || ||| |||| |||| |||||||| ||||||||||||||||||||||||||    
T  6765037 acaatacaaaattgattttctaatatctaagtctcttaaaa-tgagacttgaattgaatagttggagcttaggctct 6765112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 6671037 - 6670987
Alignment:
Q  152 attgaatatatattcacaacaacacaaaattgaatctcttattttaagaga 202  Q
    |||||||||| ||||||||||| |||||||||| |||||| ||||||||||    
T  6671037 attgaatatacattcacaacaatacaaaattgattctcttgttttaagaga 6670987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 6771311 - 6771375
Alignment:
Q  22 gaattgaatagttggagcttag-ctctcaaccatttaatatacatttaccacaatacaaacttga 85  Q
    |||||||||| ||||||||||| |||||||||||| ||||||| ||||  |||| ||||| ||||    
T  6771311 gaattgaataattggagcttagcctctcaaccattgaatatacttttaaaacaacacaaaattga 6771375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 46524795 - 46524612
Alignment:
Q  23 aattgaatagttggagcttagctctcaaccatttaatatacatttaccacaatacaaacttgattttctaatttcaagcctctcaaaaat--gagactta 120  Q
    ||||||| |||| ||||||||||||| |||||| ||| | |||| || |||||||||| |||| | |||||||||||| |||| ||||||  ||||| ||    
T  46524795 aattgaagagttagagcttagctctccaccattgaatttgcattcacaacaatacaaaattgaatctctaatttcaagtctcttaaaaatgggagacata 46524696  T
Q  121 aattgaatagttggagcttaggctctcaaccattgaa--tatatattcacaacaacacaaaattgaatctcttattttaagaga 202  Q
    ||| || ||||||||||||||||||||||||||||||  |||||||||||| ||| |||||||||| |||||| ||||||||||    
T  46524695 aatagagtagttggagcttaggctctcaaccattgaatgtatatattcacagcaatacaaaattgattctcttgttttaagaga 46524612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 2942437 - 2942486
Alignment:
Q  152 attgaatatatattcacaacaacacaaaattgaatctcttattttaagag 201  Q
    |||||||||| ||||||||||| |||||||| | |||||| |||||||||    
T  2942437 attgaatatacattcacaacaatacaaaattaattctcttgttttaagag 2942486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 71 - 201
Target Start/End: Complemental strand, 17703 - 17579
Alignment:
Q  71 acaatacaaacttgattttctaatttcaagcctctcaaaaatgagacttaaattgaatagttggagcttaggctctcaaccattgaatatatattcacaa 170  Q
    |||||||||| ||||||||||||||||||| |||| |||| |||||     ||| |||||||||||||| | ||||| ||||||||||| ||||||||||    
T  17703 acaatacaaaattgattttctaatttcaagtctcttaaaa-tgaga-----atttaatagttggagctttgactctctaccattgaataaatattcacaa 17610  T
Q  171 caacacaaaattgaatctcttattttaagag 201  Q
    |||||||||||||| ||||| ||||||||||    
T  17609 caacacaaaattgagtctctcattttaagag 17579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 17413 - 17355
Alignment:
Q  143 ctctcaaccattgaatatatattcacaacaacacaaaattgaatctcttattttaagag 201  Q
    ||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  17413 ctctctaccattgaataaatattcacaacaacacaaaattgagtctctcattttaagag 17355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University