View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_8 (Length: 591)
Name: NF2312_low_8
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Complemental strand, 4982593 - 4982030
Alignment:
| Q |
18 |
gctccatcataacctttcttcctgataatctcaggtgctacataagctggagtaccgcatgttgtatgaagaagatcgtctttcttttttgattccaaca |
117 |
Q |
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| T |
4982593 |
gctccatcataacctttcttcctgataatctcaggtgctacataagctggagtaccgcatgttgtatgaagaagatcgtcttttttttttgattccaaca |
4982494 |
T |
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| Q |
118 |
atgcactaagaccaaaatcagcaactttaaggttaccattttcgtcaaggagaagattttctggtttaaggtcgcgatgataaatccctcttctatgaca |
217 |
Q |
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| T |
4982493 |
atgcactaagaccaaaatcagcaactttaaggttaccattttcgtcgaggagaagattttctggtttaaggtcgcgatgataaatccctcttctatgaca |
4982394 |
T |
|
| Q |
218 |
atgatcaacagctgcaataagttgctggaaatatttcctagccatatcttccctcagcttccctcgagacactttatggcaaagctcgccacctttcact |
317 |
Q |
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| T |
4982393 |
atgatcaacagctgcaataagttgctggaaatatttcctagccatatcttccctcagcttccctcgagacactttatggaaaagctcgccacctttcact |
4982294 |
T |
|
| Q |
318 |
tgttccattgcaaaatatatctttgttttgcttgccatgacctcgtagaattcgacaatgttagggtgtcgaacaagacgcataaccgagatttcacgct |
417 |
Q |
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| T |
4982293 |
tgttccattgcaaaatatatctttgttttgcttgccatgacctcgtagaattcgacaatgttagggtgtcgaacaagacgcataaccgagatttcacgct |
4982194 |
T |
|
| Q |
418 |
tgatttgctccttcaaaccgactttcatgatcatcgctttgtcgaacaccttgatagcaacattttgtcctgtctttaagttccttgcatggtaaacttt |
517 |
Q |
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| T |
4982193 |
tgatttgctccttcaaaccgactttcatgatcatcgctttgtcgaacaccttgatagcaacattttgtcctgtctttaagttccttgcatggtaaacttt |
4982094 |
T |
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| Q |
518 |
ggcaaaacttccttggccaagcatgcgtcctacctcatacttttgcattagaattgttcctttg |
581 |
Q |
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| T |
4982093 |
ggcaaaacttccttggccaagcatgcgtcctacctcatacttttgcattagaattgttcctttg |
4982030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 35828073 - 35828027
Alignment:
| Q |
120 |
gcactaagaccaaaatcagcaactttaaggttaccattttcgtcaag |
166 |
Q |
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||||||||||||||||| | ||||||||||||||| ||||| ||||| |
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| T |
35828073 |
gcactaagaccaaaatctgaaactttaaggttacctttttcatcaag |
35828027 |
T |
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