View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_80 (Length: 253)
Name: NF2312_low_80
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_80 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 4369449 - 4369274
Alignment:
| Q |
1 |
tttgcatgtgtctttgttattttgattataatgaattctgggattttatgttctaatttacatgcatattgatcaattcttaccaatataatatttcttt |
100 |
Q |
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| T |
4369449 |
tttgcatgtgtctttgttattttgattataatgaattctgggattttatgttctaatttacatgcatattgatcaattcttaccaatataatatttcttt |
4369350 |
T |
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| Q |
101 |
taattatttttctttatatatggtccagtaatattgtgatatctgtcaccttgatgttaatctgatatatttgttg |
176 |
Q |
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| T |
4369349 |
taattatttttctttatgtatggtccagaaatattgtgatatttgtcaccttgatgttaatctgatatatttgttg |
4369274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 172 - 245
Target Start/End: Complemental strand, 4369238 - 4369165
Alignment:
| Q |
172 |
tgttgataatatcatttctgcatgattttgcatatattaatatgaattcaatatacaatttgtatgatattctt |
245 |
Q |
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| T |
4369238 |
tgttgatagtatcatttctgcatgattttgcatatattaatatgaattcaatatacaatttgcatgattttctt |
4369165 |
T |
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