View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_81 (Length: 253)
Name: NF2312_low_81
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_81 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0201 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 2636810 - 2637040
Alignment:
| Q |
15 |
atgaagtgcagatttgatggcagattcactcttggcaaaaactctgggtctaagatgggg---tatccaatcagttctagatttacaatttagtaatgtt |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2636810 |
atgaagtgcagatttgatggcagattgactcttggcaaaaactctgggtctaagatgggggggtatccaatcagttctagatttacaatttagtaatgtt |
2636909 |
T |
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| Q |
112 |
gtgtttgaattagatgcatcagttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgttt |
211 |
Q |
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|||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2636910 |
gtgtttgaattagatgcatcagctgtagttaagtg---ta--------tcaacaatagctagtataagcccttttattagtgactgtcatgattttgttt |
2636998 |
T |
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| Q |
212 |
ggtaatttagatggttgttctgttagttttgttaatcgctct |
253 |
Q |
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| T |
2636999 |
ggtaatttagatggttgttctgttagttttgttaatcgctct |
2637040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 29347129 - 29346908
Alignment:
| Q |
31 |
atggcagattcactcttggcaaaaactctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcat |
130 |
Q |
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||||| ||| |||| |||||| | ||||| ||||||||||||||||||||| | || ||||| |||||| ||||||||||| |||||||||| ||||| | |
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| T |
29347129 |
atggctgatccacttttggcagagactcttggtctaagatggggtatccaaactgtcctagaattacaacttagtaatgttatgtttgaattggatgctt |
29347030 |
T |
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| Q |
131 |
cagttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgtt |
230 |
Q |
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| |||||||||||||| || || |||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||||| |||| ||| |
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| T |
29347029 |
ctgttgtagttaagtgtttcaatgggctgtcaacaatagctagtattagtccctttattagtgactgtcatga-cttgtttggtagtttagttggtagtt |
29346931 |
T |
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| Q |
231 |
ctgttagttttgttaatcgctct |
253 |
Q |
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||||||| ||||||||||||||| |
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| T |
29346930 |
ctgttagctttgttaatcgctct |
29346908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 133 - 253
Target Start/End: Original strand, 4460952 - 4461071
Alignment:
| Q |
133 |
gttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttct |
232 |
Q |
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|||||| ||||||| ||||| |||| ||||||||||||||||| || ||||||||||||||||||||||| |||||||||| ||||| |||| ||||| |
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| T |
4460952 |
gttgtacttaagtgttttaatgggctgtcaacaatagctagtattagtccttttattagtgactgtcatga-cttgtttggtagtttagttggtagttct |
4461050 |
T |
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| Q |
233 |
gttagttttgttaatcgctct |
253 |
Q |
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||||| ||| ||||| ||||| |
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| T |
4461051 |
gttagctttattaattgctct |
4461071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 55 - 253
Target Start/End: Complemental strand, 16649 - 16452
Alignment:
| Q |
55 |
actctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcatcagttgtagttaagtgctttaacg |
154 |
Q |
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||||| ||||||||||||||||||||| | || ||||| |||||| ||||||||||| |||||||||| ||||| || |||||||||||||| || || | |
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| T |
16649 |
actcttggtctaagatggggtatccaaactgtcctagaattacaacttagtaatgttatgtttgaattggatgcttctgttgtagttaagtgtttcaatg |
16550 |
T |
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| Q |
155 |
ggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttagttttgttaatcgctct |
253 |
Q |
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||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||||| |||| |||||||||| ||||||||||||||| |
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| T |
16549 |
ggctgtcaacaatagctagtattagtccctttattagtgactgtcatga-cttgtttggtagtttagttggtagttctgttagctttgttaatcgctct |
16452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 31 - 253
Target Start/End: Original strand, 35788786 - 35789007
Alignment:
| Q |
31 |
atggcagattcactcttggcaaaaactctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcat |
130 |
Q |
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||||| ||| |||| |||||| | ||||| ||||||||||||||||||||| | || |||| |||||| ||||||||||| |||||||||| ||||| | |
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| T |
35788786 |
atggctgatccactattggcagagactcttggtctaagatggggtatccaaactgtcttagaattacaacttagtaatgttctgtttgaattggatgctt |
35788885 |
T |
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| Q |
131 |
cagttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgtt |
230 |
Q |
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| |||||||||||||| ||||| || | ||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||||| |||| ||| |
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| T |
35788886 |
ctgttgtagttaagtgttttaatggactgtcaacaatagctagtattagtccctttattagtgactgtcatga-cttgtttggtagtttagttggtagtt |
35788984 |
T |
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| Q |
231 |
ctgttagttttgttaatcgctct |
253 |
Q |
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||||||| ||||||||||||||| |
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| T |
35788985 |
ctgttagctttgttaatcgctct |
35789007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 253
Target Start/End: Complemental strand, 14443785 - 14443588
Alignment:
| Q |
55 |
actctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcatcagttgtagttaagtgctttaacg |
154 |
Q |
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||||| ||||||||||||||||||||| | || ||||| |||||| |||||||| || |||||||||| ||||| || |||||||||||||| || || | |
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| T |
14443785 |
actcttggtctaagatggggtatccaaactgtcctagaattacaacttagtaatattatgtttgaattggatgcttctgttgtagttaagtgtttcaatg |
14443686 |
T |
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| Q |
155 |
ggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttagttttgttaatcgctct |
253 |
Q |
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||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||| ||||| |||| |||||||||| ||||||||||||||| |
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| T |
14443685 |
ggctgtcaacaatagctagtattagtccctttattagtgactgtcatga-cttgtttggtagtttagttggtagttctgttagctttgttaatcgctct |
14443588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 19501298 - 19501077
Alignment:
| Q |
31 |
atggcagattcactcttggcaaaaactctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcat |
130 |
Q |
| |
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||||| ||| |||| |||||| | ||||| ||||||||||||||||||||| | || |||| |||||| ||||||||||| | |||||||| ||||| | |
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| T |
19501298 |
atggctgatgcactattggcagagactcttggtctaagatggggtatccaaactgtcttagaattacaacttagtaatgttctatttgaattggatgctt |
19501199 |
T |
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| Q |
131 |
cagttgtagttaagtgctttaacgggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgtt |
230 |
Q |
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|||||||||||||| ||||| ||| ||||||||||||||||| | || |||||||||||||||||||| |||||||||| | ||| |||| ||| |
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| T |
19501198 |
atgttgtagttaagtgttttaatgggatgtcaacaatagctagtattattccctttattagtgactgtcatga-cttgtttggtagtatagttggtagtt |
19501100 |
T |
|
| Q |
231 |
ctgttagttttgttaatcgctct |
253 |
Q |
| |
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||||||| ||||||||||||||| |
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| T |
19501099 |
ctgttagctttgttaatcgctct |
19501077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 253
Target Start/End: Complemental strand, 6468428 - 6468236
Alignment:
| Q |
55 |
actctgggtctaagatggggtatccaatcagttctagatttacaatttagtaatgttgtgtttgaattagatgcatcagttgtagttaagtgctttaacg |
154 |
Q |
| |
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||||| |||||||||||||||||| || | || |||| |||||| ||||||||||| |||||||||| ||||| || |||||||||||||| ||||| | |
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| T |
6468428 |
actcttggtctaagatggggtatctaaactgtcttagaattacaacttagtaatgttttgtttgaattggatgcttctgttgtagttaagtgttttaatg |
6468329 |
T |
|
| Q |
155 |
ggcattcaacaatagctagtataagcccttttattagtgactgtcatgattttgtttggtaatttagatggttgttctgttagttttgttaatcgctct |
253 |
Q |
| |
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||| ||||||||||||||||| || || ||||| |||||||||| || ||||||| ||||| |||| ||||||| || ||||||||||||||| |
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| T |
6468328 |
ggctgtcaacaatagctagtattagtccctttat-----actgtcatga-cttatttggtagtttagttggtagttctgtcagctttgttaatcgctct |
6468236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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