View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_85 (Length: 250)
Name: NF2312_low_85
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_85 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 4356672 - 4356437
Alignment:
| Q |
10 |
atatgaaatctcaactgatttatgttccttttaatatattttccatttaatataatggaacagaataatcctgtaaatatgaagtgcactgatatgtatt |
109 |
Q |
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| T |
4356672 |
atatgaaatcttaactgatttatgttccttttaatatattttccatttaat-----ggaacagaataatcctgtaaatatcaagtgcactgatatgtatt |
4356578 |
T |
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| Q |
110 |
taatttaattttccttccagcaaaagaacacacatgcttcgttgaaattaatataacatgggctatagaaagatactaaaatat-aaagagaaattgata |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| |
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| T |
4356577 |
taatttaattttccttccagcaaaagaacacacatgcttcgttgaaattaatataacatgggctatagaaagataccagaatataaaagagaaattgata |
4356478 |
T |
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| Q |
209 |
gtaacataactgnnnnnnnntaaaagacgctaaatagaaaa |
249 |
Q |
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| T |
4356477 |
gtaacataactgaaaaaaaataaaagacgctaaatagaaaa |
4356437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 4674383 - 4674445
Alignment:
| Q |
159 |
aatataacatgggctatagaaagatactaaaatataaa-gagaaattgatagtaacataactg |
220 |
Q |
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| T |
4674383 |
aatataacatgagctatagaaagataccagaatataaaagagaaattgatagtaacataactg |
4674445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 161
Target Start/End: Original strand, 4674199 - 4674310
Alignment:
| Q |
41 |
taatatattttccatttaatataatggaacagaataatcctgtaaa-tatgaagtgcactgatatgtatttaatttaattttccttccagcaaaagaaca |
139 |
Q |
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| T |
4674199 |
taatatattttccatttaat-----ggaacagaataatcctgtaaaatatcaggtgtacttatatgtattaaatt-----ttccttctagcaaaagaaca |
4674288 |
T |
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| Q |
140 |
cacatgcttcgttgaaattaat |
161 |
Q |
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| T |
4674289 |
cacatgcttggttgaatttaat |
4674310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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