View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_88 (Length: 250)
Name: NF2312_low_88
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_88 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: scaffold0103 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 5060 - 4821
Alignment:
| Q |
1 |
ctatctatctctatatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgtt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5060 |
ctatctatttctatatcatatcatatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgtt |
4961 |
T |
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| Q |
101 |
caacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaacttaagtagact |
200 |
Q |
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| T |
4960 |
caacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaacttaagtagact |
4861 |
T |
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| Q |
201 |
atttcctaacaacttaaagtaaaaatctcttcctcctatg |
240 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
4860 |
atttcctaacaacttaaagtaaaaatttcttcctcctatg |
4821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2634949 - 2635188
Alignment:
| Q |
1 |
ctatctatctctatatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgtt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2634949 |
ctatctatttctatatcatatcatatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgtt |
2635048 |
T |
|
| Q |
101 |
caacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaacttaagtagact |
200 |
Q |
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| T |
2635049 |
caacctattatttgaaagttgtattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaacttaagtagact |
2635148 |
T |
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| Q |
201 |
atttcctaacaacttaaagtaaaaatctcttcctcctatg |
240 |
Q |
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| T |
2635149 |
atttcctaacaacttaaagtaaaaatttcttcctcctatg |
2635188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 24 - 240
Target Start/End: Original strand, 2592998 - 2593215
Alignment:
| Q |
24 |
tatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctcttatttgaaagttgca |
123 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| | |
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| T |
2592998 |
tatatgaataaaaccatggctcccacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgtttaacctcttatttaaaaattgta |
2593097 |
T |
|
| Q |
124 |
ttaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgatgtagaaaactt-aagtagactatttcctaacaacttaaagtaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||||||||| | |||| |
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| T |
2593098 |
ttaatattgttaatgtcaattttgatttaatgcatatgtacttgattccctagcgatgtagaaaacttgaagtagaacatttcctaacaacttgatgtaa |
2593197 |
T |
|
| Q |
223 |
aaatctcttcctcctatg |
240 |
Q |
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|||| |||| |||||||| |
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| T |
2593198 |
aaatttcttactcctatg |
2593215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 117
Target Start/End: Original strand, 2624515 - 2624619
Alignment:
| Q |
13 |
atatcatatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaagtagtcttgttcaacctcttatt |
112 |
Q |
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||||||||||||||||||||||||||||| ||| |||||| |||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2624515 |
atatcatatcatatatgaataaaaccatgactcccacctaaaaaaaaagtggagttaaggagatgacacttattgaagtagtcttgttcaacctcttatt |
2624614 |
T |
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| Q |
113 |
tgaaa |
117 |
Q |
| |
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||||| |
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| T |
2624615 |
tgaaa |
2624619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 2568238 - 2568077
Alignment:
| Q |
81 |
cttattgaagtagtcttgttcaacctcttatttgaaagttgcattaatattgttaatgtcaattttgatttaatgcatatgtacttgattacctatcgat |
180 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||| | ||| |||||||||||||||||| ||||||||| |||||||||| ||||| ||||| || ||| |
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| T |
2568238 |
cttattgaagtagtctaattccacctcttatttgagaattgtattaatattgttaatgtcgattttgattaaatgcatatgcacttgtttaccaatggat |
2568139 |
T |
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| Q |
181 |
gtagaa-aactt-aagtagactatttcctaacaacttaaagtaaaaatctcttcctcctatg |
240 |
Q |
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|||||| ||||| ||||||| ||||||||||||||||| |||||| | ||||||||||||| |
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| T |
2568138 |
gtagaacaacttgaagtagaatatttcctaacaacttagtgtaaaactttcttcctcctatg |
2568077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 2671663 - 2671592
Alignment:
| Q |
18 |
atatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacacttattgaa |
89 |
Q |
| |
|
|||||||||||| ||||| |||||| |||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
2671663 |
atatcatatatggttaaaattgtggctcctaccttgaaaataaggggagttagggagatgacacttattgaa |
2671592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 2568324 - 2568258
Alignment:
| Q |
18 |
atatcatatatgaataaaaccatggctcacacctagaaaataagcggagttagggagatgacactta |
84 |
Q |
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||||||||||||| ||||| | |||||| ||||| || ||||| |||||||||||||||||||||| |
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| T |
2568324 |
atatcatatatgattaaaatcttggctcccaccttgagaataatgggagttagggagatgacactta |
2568258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 2640572 - 2640528
Alignment:
| Q |
82 |
ttattgaagtagtcttgttcaacctcttatttgaaagttgcatta |
126 |
Q |
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||||||||| |||||||||| ||||||||||||||| |||||||| |
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| T |
2640572 |
ttattgaagaagtcttgttctacctcttatttgaaaattgcatta |
2640528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 2595706 - 2595662
Alignment:
| Q |
82 |
ttattgaagtagtcttgttcaacctcttatttgaaagttgcatta |
126 |
Q |
| |
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||||||||| |||||||||| ||||||||||||||| ||| |||| |
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| T |
2595706 |
ttattgaagaagtcttgttctacctcttatttgaaaattgtatta |
2595662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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