View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2312_low_89 (Length: 249)
Name: NF2312_low_89
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_89 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 51347991 - 51348134
Alignment:
| Q |
9 |
gaaatgaaaaagggtgtggctgcaatagaattgggttgctgcaatttgaaagtgaaagtgtgaaattgagaagatgaaatttggtgtgtg---gatgatg |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
51347991 |
gaaatgaaaaagggtgtggctgcaatagaattgggttgctgcaatttgaaagtgaaagtgtgaaattgagaagatgaaatttggtgtgtggatgatgatg |
51348090 |
T |
|
| Q |
106 |
atatacaaacccagaaaaataataaaacccataaatattgcaaa |
149 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51348091 |
atataaaaacccagaaaaataataaaacccataaatattgcaaa |
51348134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 53897473 - 53897336
Alignment:
| Q |
14 |
gaaaaagggtgtggctgcaatagaattgggttgctgcaatttgaaagtgaaagtgtgaaattgagaagatgaaatt---tggtgtgtggatgatgatata |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
53897473 |
gaaaaagggtgtggctccaatagaattgggttgctgcaatttgagagtgaaagtgtgaaattgagaagatgaaatttgatgttgtgtggatgatgatata |
53897374 |
T |
|
| Q |
111 |
caaacccagaaaaataataaaacccataaatattgcaa |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
53897373 |
caaacccagaaaaataataaaacccataaatgttgcaa |
53897336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University