View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_9 (Length: 576)

Name: NF2312_low_9
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_9
NF2312_low_9
[»] chr4 (3 HSPs)
chr4 (151-559)||(23892380-23892782)
chr4 (159-535)||(35902598-35902963)
chr4 (13-184)||(23892155-23892326)
[»] chr8 (1 HSPs)
chr8 (367-427)||(38852848-38852908)
[»] chr3 (1 HSPs)
chr3 (367-415)||(2212409-2212457)


Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 151 - 559
Target Start/End: Original strand, 23892380 - 23892782
Alignment:
Q  151 tcattgaaaacacgtttgagagttccacaatcttctttgtagagtgccaagaattgggtccctaaatcttgaaatgcaacatatttgtttagttttagtt 250  Q
    ||||| ||||||||||||||||||||||||||||||||      |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23892380 tcattcaaaacacgtttgagagttccacaatcttcttt------tgccaataattgggtccctaaatcttgaaatgcaacatatttgtttagttttagtt 23892473  T
Q  251 tggttctttatcttatttttaaatccagtttgctcataatattgtctcattttatattcaatttagtcctaatgaccctttannnnnnncaaattgttct 350  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  23892474 tggttatttatcttatttttaaatccagtttgctcataatattgtctcattttatattcaatttagtcctaatgaccctttatttttttcaaattgttct 23892573  T
Q  351 ttcgcttctatgacaaatttaaggatcatgagttgcgaggattgcaatttcaaaaggtaaacattgttgaacatgtgagggccaaggtgtcttcttgaga 450  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  23892574 ttcgcttctatgacaaatttaaggatcatgagttgcgaggattacaatttcaaaaggtaaacattgttgaacatgagagggccaaggtgtcttcttgaga 23892673  T
Q  451 gactgcaatgatcttttgttgaagatataaattgacttttttcctgatctatgtttctggagttttcattctttactatatgttactactacatgttttc 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23892674 gactgcaatgatcttttgttgaagatataaattgacttttttcctgatctatgtttctggagttttcattctttactatatgttactactacatgttttc 23892773  T
Q  551 attccaaag 559  Q
    |||||||||    
T  23892774 attccaaag 23892782  T

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Target: chr4; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 159 - 535
Target Start/End: Original strand, 35902598 - 35902963
Alignment:
Q  159 aacacgtttgagagttccacaatcttctttgtagagtgccaagaattgggtccctaaatcttgaaatgcaacatatttgtttagttttagtttggttctt 258  Q
    ||||||||| |||||||| ||| ||| |   ||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||| |||||||    
T  35902598 aacacgtttaagagttcctcaaacttttaaatagagtgccaagaattgagtccctaa-tctggaaatgcaacatatttgtttagttttagttaggttctt 35902696  T
Q  259 tatcttatttttaaatccagtttgctcataatattgtctcattttatattcaatttagtcctaatgaccctttannnnnnncaaattgttctttcgcttc 358  Q
    ||||||| |||||||| ||||||| ||||||||| |||||||||| |||||| |||||||||||||| ||||||       |||||||||||||| |||     
T  35902697 tatcttacttttaaattcagtttggtcataatatagtctcattttttattca-tttagtcctaatgatcctttatttttttcaaattgttctttcacttt 35902795  T
Q  359 tatgacaaatttaaggatcatgagttgcgaggattgcaatttcaaaaggtaaacattgttgaacatgtgagggccaaggtgtcttcttgagagactgcaa 458  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||||||||  |||||||||||||||||||  |||||||||||||| ||||| |||    
T  35902796 tatgacaaatttaaggatcatgagttgtgaggattgcaacatcaaaaggtaaattttgttgaacatgtgagggcagaggtgtcttcttgatagactacaa 35902895  T
Q  459 tgatcttttgttgaagatataaattgacttttttcctgatctatgtttctggagttttcattctttactatatgtta 535  Q
    ||||||||||||||||||| | ||||||||||         ||||||| ||||||||||||||||||||| ||||||    
T  35902896 tgatcttttgttgaagatagatattgactttt---------tatgtttttggagttttcattctttactacatgtta 35902963  T

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Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 184
Target Start/End: Original strand, 23892155 - 23892326
Alignment:
Q  13 aatatcataaacaagcatttagttaaatatggttaagttatatgcagactgattttcctgttttaaatcaagacaatggtttgttttatatgcagacatg 112  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23892155 aatatcataaacaagcatttagtaaaatatggtttagttatatgcagactgattttcctgttttaaatcaagacaatggtttgttttatatgcagacatg 23892254  T
Q  113 tgaagttcgagtcttaaattgctaatacattgtgctcatcattgaaaacacgtttgagagttccacaatctt 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23892255 tgaagttcgagtcttaaattgctaatacattgtgctcatcattgaaaacacgtttgagagttccacaatctt 23892326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 427
Target Start/End: Complemental strand, 38852908 - 38852848
Alignment:
Q  367 atttaaggatcatgagttgcgaggattgcaatttcaaaaggtaaacattgttgaacatgtg 427  Q
    |||||||||||||||||   ||||| ||||||||||||||| ||||||||||||| |||||    
T  38852908 atttaaggatcatgagtgatgaggactgcaatttcaaaaggcaaacattgttgaatatgtg 38852848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 2212409 - 2212457
Alignment:
Q  367 atttaaggatcatgagttgcgaggattgcaatttcaaaaggtaaacatt 415  Q
    |||||||||||||||||   ||||| ||||||||||||||| |||||||    
T  2212409 atttaaggatcatgagtgatgaggactgcaatttcaaaaggcaaacatt 2212457  T

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