View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_92 (Length: 247)
Name: NF2312_low_92
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_92 |
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| [»] scaffold0097 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 2637190 - 2637330
Alignment:
| Q |
11 |
tagctatgtattgcccacattttcattacttgatcctccaagtgaaaagggtatttgatttgttttcagttattttgtatcatcagccgcaagtcatccc |
110 |
Q |
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| T |
2637190 |
tagctatgtattgcccacattttcattacttgatcctccaagtgaaaagggtatttgatttgttttcagttattttgtatcatcagccgcaagtcatccc |
2637289 |
T |
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| Q |
111 |
atcttattctgaaggacactgacactgatttgcttttgaga |
151 |
Q |
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| T |
2637290 |
atcttattctgaaggacactgacactgatttgtttttgaga |
2637330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 159 - 229
Target Start/End: Complemental strand, 2658223 - 2658153
Alignment:
| Q |
159 |
agaaatcttgatttggagtggcagggataaattagtgatgaaatactctaaagggtgaaatgttgattcat |
229 |
Q |
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| T |
2658223 |
agaagtcttgatttgaagtggtagggataaattagtgatgaaatactctaaagggtttaatgttgattcat |
2658153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 2658335 - 2658263
Alignment:
| Q |
15 |
tatgtattgcccacattttcattacttgatcctccaagtgaaa-agggtatttgatttgttttcagttatttt |
86 |
Q |
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| T |
2658335 |
tatgtatatcccacattttcattacttgatcctccaggtggaagagggtatttgatttgttttcagttatttt |
2658263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 35864 - 36087
Alignment:
| Q |
16 |
atgtattgcccacattttcattacttgatcctccaagtgaaaa--gggtatttgatttgttttcagttattttgtatcatcagccgcaagtcatcccatc |
113 |
Q |
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| T |
35864 |
atgtattgcccacattttcattacttgaacctccaggtggaaaaggggtatttgatttgctttcagttagtttgtatcatcagccacaagtcatcccatc |
35963 |
T |
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| Q |
114 |
ttattctgaaggacactgacactga------tttgcttttgagatagtacaagaaatcttgatttggagtggcagggataaattagtgatgaaatactct |
207 |
Q |
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| T |
35964 |
ttattttgaatgacactgacactgattttattttatttttgagatagtacaagaagtcttgatttggagtggtagggataagttagtgatgaaatactcc |
36063 |
T |
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| Q |
208 |
aaagggtgaaatgttgattcatga |
231 |
Q |
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| T |
36064 |
aaagggtggaatgttgattcatga |
36087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 27982679 - 27982612
Alignment:
| Q |
32 |
ttcattacttgatcctccaagtg-aaaagggtatttgatttgttttcagttattttgtatcatcagcc |
98 |
Q |
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| T |
27982679 |
ttcattacttgctcctctaggtggaaaatggtatttgatttgttttcagttattttatatcatcagcc |
27982612 |
T |
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