View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_96 (Length: 246)

Name: NF2312_low_96
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_96
NF2312_low_96
[»] scaffold0051 (1 HSPs)
scaffold0051 (27-73)||(20152-20198)
[»] chr3 (7 HSPs)
chr3 (24-74)||(49501513-49501563)
chr3 (29-73)||(2447655-2447699)
chr3 (27-73)||(41650005-41650051)
chr3 (126-163)||(2447752-2447789)
chr3 (126-163)||(41650104-41650141)
chr3 (126-163)||(49501424-49501461)
chr3 (27-73)||(49303267-49303313)
[»] chr5 (8 HSPs)
chr5 (24-73)||(18172117-18172166)
chr5 (27-73)||(1081870-1081916)
chr5 (28-73)||(34954108-34954153)
chr5 (27-73)||(7662186-7662232)
chr5 (126-163)||(2786868-2786905)
chr5 (24-73)||(12144102-12144151)
chr5 (126-162)||(1081781-1081817)
chr5 (126-163)||(34954184-34954221)
[»] chr4 (9 HSPs)
chr4 (24-73)||(52789451-52789500)
chr4 (27-73)||(43502267-43502313)
chr4 (126-163)||(36046798-36046835)
chr4 (24-73)||(36046888-36046937)
chr4 (24-73)||(54703693-54703742)
chr4 (126-163)||(54703794-54703831)
chr4 (27-73)||(33985431-33985477)
chr4 (27-73)||(54808986-54809032)
chr4 (126-163)||(54808896-54808933)
[»] chr7 (8 HSPs)
chr7 (27-74)||(3742351-3742398)
chr7 (27-73)||(37450061-37450107)
chr7 (126-163)||(3742262-3742299)
chr7 (27-73)||(4035134-4035180)
chr7 (27-73)||(14678363-14678409)
chr7 (24-73)||(39284045-39284094)
chr7 (126-163)||(40144675-40144712)
chr7 (126-162)||(37450159-37450195)
[»] chr6 (1 HSPs)
chr6 (27-73)||(11599078-11599124)
[»] chr2 (12 HSPs)
chr2 (27-73)||(1887977-1888023)
chr2 (27-73)||(5814517-5814563)
chr2 (27-74)||(21083827-21083873)
chr2 (30-73)||(32737854-32737897)
chr2 (27-73)||(6728677-6728723)
chr2 (27-73)||(34619883-34619929)
chr2 (27-73)||(41192365-41192411)
chr2 (126-163)||(5814427-5814464)
chr2 (122-163)||(41192275-41192316)
chr2 (129-163)||(6728779-6728813)
chr2 (126-163)||(21083925-21083962)
chr2 (126-163)||(34619793-34619830)
[»] chr1 (7 HSPs)
chr1 (27-73)||(7014756-7014802)
chr1 (27-73)||(33686526-33686572)
chr1 (27-73)||(43138631-43138677)
chr1 (126-163)||(7014666-7014703)
chr1 (126-163)||(43138541-43138578)
chr1 (28-73)||(15399129-15399174)
chr1 (126-163)||(33686436-33686473)
[»] chr8 (6 HSPs)
chr8 (27-73)||(15739689-15739735)
chr8 (126-163)||(15739599-15739636)
chr8 (126-163)||(35161763-35161800)
chr8 (27-74)||(35161665-35161711)
chr8 (27-73)||(5913098-5913144)
chr8 (126-163)||(4322854-4322891)


Alignment Details
Target: scaffold0051 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 20152 - 20198
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  20152 cggtggtaaaaattgaagcacaaacgtttcttggacggtagtcaatg 20198  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 49501563 - 49501513
Alignment:
Q  24 ggtcggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatga 74  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  49501563 ggtcggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatga 49501513  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 2447655 - 2447699
Alignment:
Q  29 gtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  2447655 gtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 2447699  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 41650005 - 41650051
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||||    
T  41650005 cggtggtaaaaactgaagcacaaatgtttcttggacggtagtcaatg 41650051  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 2447752 - 2447789
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  2447752 ctcattaaatgccatataccttataccacctataaaaa 2447789  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 41650104 - 41650141
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  41650104 ctcattaagtgtcatataccttataccacctataaaaa 41650141  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 49501461 - 49501424
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  49501461 ctcattaagtgtcatataccttataccacctataaaaa 49501424  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 49303267 - 49303313
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  ||||||||||||||||| |||||||| ||||||    
T  49303267 cggtggtaaaaactgaagcacaaacgtttctaggacggtaatcaatg 49303313  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 18172166 - 18172117
Alignment:
Q  24 ggtcggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  18172166 ggtcggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 18172117  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 1081916 - 1081870
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  1081916 cggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 1081870  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 34954108 - 34954153
Alignment:
Q  28 ggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||||||||||  |||||||||||||||||||||||||||||||||    
T  34954108 ggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 34954153  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 7662232 - 7662186
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  ||||||||||||||||||| |||||||||||||    
T  7662232 cggtggtaaaaactgaagcacaaacgtttcttgaacggtagtcaatg 7662186  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 2786868 - 2786905
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  2786868 ctcattaagtgtcatataccttataccacctataaaaa 2786905  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 12144102 - 12144151
Alignment:
Q  24 ggtcggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||| ||| ||||||  |||||||||||||||||||||||||||||||||    
T  12144102 ggtcagtgttaaaaactgaagcacaaacgtttcttggacggtagtcaatg 12144151  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 162
Target Start/End: Complemental strand, 1081817 - 1081781
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaa 162  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1081817 ctcattaaatgacatataccttataccacctataaaa 1081781  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 34954184 - 34954221
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  34954184 ctcattaagtgtcatataccttatatcacctataaaaa 34954221  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 52789451 - 52789500
Alignment:
Q  24 ggtcggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||    
T  52789451 ggtcggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 52789500  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 43502313 - 43502267
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  43502313 cggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 43502267  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 36046835 - 36046798
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  36046835 ctcattaagtgtcatataccttataccacctataaaaa 36046798  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 36046937 - 36046888
Alignment:
Q  24 ggtcggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||||||||||||||  ||| |||||||||||||||||| ||||||||||    
T  36046937 ggtcggtggtaaaaactgaaacacaaacgtttcttggacagtagtcaatg 36046888  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 54703693 - 54703742
Alignment:
Q  24 ggtcggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||||||||||||||  |||| ||||||||||||||||||||||| ||||    
T  54703693 ggtcggtggtaaaaactgaagaacaaacgtttcttggacggtagttaatg 54703742  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 54703794 - 54703831
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  54703794 ctcattaagtgtcatataccttataccacctataaaaa 54703831  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 33985477 - 33985431
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||| |||||||  ||||||||||||||||||||||||| |||||||    
T  33985477 cggtagtaaaaactgaagcacaaacgtttcttggacggtggtcaatg 33985431  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 54809032 - 54808986
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  ||| ||||||| |||||||||||||||||||||    
T  54809032 cggtggtaaaaactgaaccacaaacatttcttggacggtagtcaatg 54808986  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 54808933 - 54808896
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  54808933 ctcattaagtgtcatataccttataccaccaataaaaa 54808896  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 3742398 - 3742351
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatga 74  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||    
T  3742398 cggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatga 3742351  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 37450061 - 37450107
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  37450061 cggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 37450107  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 3742299 - 3742262
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3742299 ctcattaaatgccatataccttataccacctataaaaa 3742262  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 4035180 - 4035134
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||| ||||||| ||||||||||||||    
T  4035180 cggtggtaaaaactgaagcacaaatgtttcttagacggtagtcaatg 4035134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 14678363 - 14678409
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  | ||||||||||||||||||||||| |||||||    
T  14678363 cggtggtaaaaactgcagcacaaacgtttcttggacggtggtcaatg 14678409  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 39284045 - 39284094
Alignment:
Q  24 ggtcggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||||||||||||||  ||||||||||||||| | ||||||| |||||||    
T  39284045 ggtcggtggtaaaaactgaagcacaaacgtttttgggacggtggtcaatg 39284094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 40144712 - 40144675
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  40144712 ctcattaagtgtcatatacgttataccacctataaaaa 40144675  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 37450159 - 37450195
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaa 162  Q
    |||||||| || |||||||||||||||||||||||||    
T  37450159 ctcattaagtgccatataccttataccacctataaaa 37450195  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 11599078 - 11599124
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  11599078 cggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 11599124  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 1887977 - 1888023
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  1887977 cggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 1888023  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 5814563 - 5814517
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  5814563 cggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 5814517  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 21083827 - 21083873
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatga 74  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  21083827 cggtggtaaaact-gaagcacaaacgtttcttggacggtagtcaatga 21083873  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 32737897 - 32737854
Alignment:
Q  30 tggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||||||||  |||||||||||||||||||||||||||||||||    
T  32737897 tggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 32737854  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 6728677 - 6728723
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||    
T  6728677 cggtggtaaaaactgaagcacagacgtttcttggacggtagtcaatg 6728723  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 34619929 - 34619883
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||    
T  34619929 cggtgataaaaactgaagcacaaacgtttcttggacggtagtcaatg 34619883  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 41192411 - 41192365
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||   ||||||||||||||||||||||||||||||||    
T  41192411 cggtggtaaaaactaaagcacaaacgtttcttggacggtagtcaatg 41192365  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 5814464 - 5814427
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5814464 ctcattaagtgtcatataccttataccacctataaaaa 5814427  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 163
Target Start/End: Complemental strand, 41192316 - 41192275
Alignment:
Q  122 ggatctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  41192316 ggatctcattaagtgccatataccttataccacctataaaaa 41192275  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 163
Target Start/End: Original strand, 6728779 - 6728813
Alignment:
Q  129 attaaatgtcatataccttataccacctataaaaa 163  Q
    ||||| |||||||||||||||||||||||||||||    
T  6728779 attaagtgtcatataccttataccacctataaaaa 6728813  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 21083925 - 21083962
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  21083925 ctcattaagtgttatataccttataccacctataaaaa 21083962  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 34619830 - 34619793
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| || ||||||||||||||||||||||||||    
T  34619830 ctcattaagtgccatataccttataccacctataaaaa 34619793  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 7014802 - 7014756
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||    
T  7014802 cggtggtaaaaactgaagcacaaacgtttcttggacggtagtcaatg 7014756  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 33686572 - 33686526
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||||    
T  33686572 cggtggtaaaaactgaagcacaaatgtttcttggacggtagtcaatg 33686526  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 43138677 - 43138631
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||    
T  43138677 cggtgataaaaactgaagcacaaacgtttcttggacggtagtcaatg 43138631  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 7014703 - 7014666
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7014703 ctcattaagtgtcatataccttataccacctataaaaa 7014666  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 43138578 - 43138541
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  43138578 ctcattaagtgtcatataccttataccacctataaaaa 43138541  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 15399129 - 15399174
Alignment:
Q  28 ggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    |||||||||||| ||||||||||||||| | ||||||| |||||||    
T  15399129 ggtggtaaaaattgaagcacaaacgtttatgggacggttgtcaatg 15399174  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 33686473 - 33686436
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| || ||||||||||||||||||||||||||    
T  33686473 ctcattaagtggcatataccttataccacctataaaaa 33686436  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 15739735 - 15739689
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||    
T  15739735 cggtggtaaaaactgaagcacaaacgtttcttggacggtaggcaatg 15739689  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 15739636 - 15739599
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  15739636 ctcattaagtgtcatataccttataccacctataaaaa 15739599  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 35161763 - 35161800
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| |||||||||||||||||||||||||||||    
T  35161763 ctcattaagtgtcatataccttataccacctataaaaa 35161800  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 35161665 - 35161711
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatga 74  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||||    
T  35161665 cggtggtaaaact-gaagcacaaacgtttcttagacggtagtcaatga 35161711  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 5913144 - 5913098
Alignment:
Q  27 cggtggtaaaaatcgaagcacaaacgtttcttggacggtagtcaatg 73  Q
    ||||||||||||  ||||||||||||||||| ||||||||| |||||    
T  5913144 cggtggtaaaaactgaagcacaaacgtttctgggacggtagccaatg 5913098  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 163
Target Start/End: Original strand, 4322854 - 4322891
Alignment:
Q  126 ctcattaaatgtcatataccttataccacctataaaaa 163  Q
    |||||||| || ||||||||||||||||||||||||||    
T  4322854 ctcattaagtgccatataccttataccacctataaaaa 4322891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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