View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2312_low_97 (Length: 246)
Name: NF2312_low_97
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2312_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 41199816 - 41199605
Alignment:
| Q |
19 |
actacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaacaaata |
118 |
Q |
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| T |
41199816 |
actacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaacaaata |
41199717 |
T |
|
| Q |
119 |
gaaaaaaggcagaagttttcaagnnnnnnnacacatgatacatttttagtgtgggattattgaaatattacatctatacttttagttcaaaccaatttca |
218 |
Q |
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| T |
41199716 |
gaaaaaaggcagaagttttcaagtttttttacacatgatacatttttagtgtgggattattgaaatattacatctatacttttagttcaaaccaatttca |
41199617 |
T |
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| Q |
219 |
atataattagtg |
230 |
Q |
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|||||||||||| |
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| T |
41199616 |
atataattagtg |
41199605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 19 - 112
Target Start/End: Complemental strand, 1041504 - 1041411
Alignment:
| Q |
19 |
actacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1041504 |
actacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaa |
1041411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 33323095 - 33322883
Alignment:
| Q |
19 |
actacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttc-aaacaaat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
33323095 |
actacagtagcaagagagaagagcttatgtgtttacctcgcgaagcaaagataatttacatttatatttttagatcaagcatttttagttcaaaacaaat |
33322996 |
T |
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| Q |
118 |
agaaaaaaggcagaagttttcaagnnnnnnnacacatgatacatttttagtgtgggattattgaaatattacatctatacttttagttcaaaccaatttc |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33322995 |
agaaaaaaggcagaagttttcaagtttttttacacatgatacatttttagtgtcggattattgaaatattacatctagacttttagttcaaaccaatttc |
33322896 |
T |
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| Q |
218 |
aatataattagtg |
230 |
Q |
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||||||||||||| |
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| T |
33322895 |
aatataattagtg |
33322883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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