View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2312_low_98 (Length: 246)

Name: NF2312_low_98
Description: NF2312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2312_low_98
NF2312_low_98
[»] chr2 (5 HSPs)
chr2 (40-137)||(13001174-13001271)
chr2 (40-122)||(15872637-15872719)
chr2 (159-225)||(13001286-13001349)
chr2 (5-45)||(2012859-2012899)
chr2 (5-45)||(32674209-32674249)
[»] chr8 (2 HSPs)
chr8 (5-45)||(2335431-2335471)
chr8 (5-45)||(39303718-39303758)
[»] chr7 (2 HSPs)
chr7 (5-45)||(30866941-30866981)
chr7 (5-45)||(47459642-47459682)
[»] chr6 (2 HSPs)
chr6 (5-45)||(373721-373761)
chr6 (5-45)||(9838325-9838365)
[»] chr5 (3 HSPs)
chr5 (5-45)||(8825037-8825077)
chr5 (5-45)||(25027923-25027963)
chr5 (42-118)||(40903956-40904032)
[»] chr4 (1 HSPs)
chr4 (5-45)||(47751538-47751578)
[»] chr1 (1 HSPs)
chr1 (5-45)||(43952786-43952826)


Alignment Details
Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 40 - 137
Target Start/End: Original strand, 13001174 - 13001271
Alignment:
Q  40 acttaattgataatatttcgtcttctaatttttctgtgataaatatcaaaatttaagatttgataagaaataatgtaattaaactatatgtggttatg 137  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13001174 acttaattgataatatttcgtcttctaatttttatgtgataaatatcaaaatttaagatttgataagaaataatgtaattaaactttatgtggttatg 13001271  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 15872637 - 15872719
Alignment:
Q  40 acttaattgataatatttcgtcttctaatttttctgtgataaatatcaaaatttaagatttgataagaaataatgtaattaaa 122  Q
    ||||||||||||||| || ||||||||||||||  ||||||||||||||||||||  |||||| ||||||||||| |||||||    
T  15872637 acttaattgataatactttgtcttctaatttttaagtgataaatatcaaaatttacaatttgacaagaaataatgcaattaaa 15872719  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 13001286 - 13001349
Alignment:
Q  159 ttgttgagagtatgaagactctattaatgactagattgtgtatagaacaattgcagagtatgtatgt 225  Q
    ||||||| |||||||| ||| ||   ||||||||||||||||| |||||||||||||||||||||||    
T  13001286 ttgttgatagtatgaacactgta---atgactagattgtgtatcgaacaattgcagagtatgtatgt 13001349  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2012899 - 2012859
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  2012899 gttaaataggaacaaaaaatttctccaaaaatgacacttaa 2012859  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 32674249 - 32674209
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||| ||||||||||| ||||||||| ||||||||||    
T  32674249 gttaaattggaacaaaaaatttctccaaaagtgacacttaa 32674209  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2335471 - 2335431
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  2335471 gttaaataggaacaaaaaatttctccaaaaatgacacttaa 2335431  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 39303718 - 39303758
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  39303718 gttaaataggaacaaaaaatttctccaaaaatgacacttaa 39303758  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 30866941 - 30866981
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  30866941 gttaaataggaacaaaaaatttctccaaaaatgacacttaa 30866981  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 47459682 - 47459642
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  47459682 gttaaatatgaacaaaaaatttctccaaaagtgacacttaa 47459642  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 373761 - 373721
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    ||||||| |||||||||||| ||||||||| ||||||||||    
T  373761 gttaaatatgaacaaaaaatttctccaaaagtgacacttaa 373721  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 9838325 - 9838365
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||| ||||||||||| ||||||||| ||||||||||    
T  9838325 gttaaattggaacaaaaaatttctccaaaagtgacacttaa 9838365  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 8825077 - 8825037
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    ||||||| |||||||||||| |||| |||||||||||||||    
T  8825077 gttaaatatgaacaaaaaatttctcaaaaaatgacacttaa 8825037  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 25027923 - 25027963
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||| ||||||||||| ||||||||| ||||||||||    
T  25027923 gttaaattggaacaaaaaatttctccaaaagtgacacttaa 25027963  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 118
Target Start/End: Original strand, 40903956 - 40904032
Alignment:
Q  42 ttaattgataatatttcgtcttctaatttttctgtgataaatatcaaaatttaagatttgataagaaataatgtaat 118  Q
    ||||||||  ||| || ||||||||||||||  ||||||| |||||||| |||  |||| | |||||||||||||||    
T  40903956 ttaattgacgatactttgtcttctaatttttaagtgataagtatcaaaaattacaattttacaagaaataatgtaat 40904032  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 47751578 - 47751538
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||| ||||||||||| ||||||||| ||||||||||    
T  47751578 gttaaattggaacaaaaaatttctccaaaagtgacacttaa 47751538  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 43952826 - 43952786
Alignment:
Q  5 gttaaatttgaacaaaaaatgtctccaaaaatgacacttaa 45  Q
    |||||||  ||||||||||| ||||||||||||||||||||    
T  43952826 gttaaataagaacaaaaaatttctccaaaaatgacacttaa 43952786  T

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