View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2313_high_4 (Length: 411)
Name: NF2313_high_4
Description: NF2313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2313_high_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 52810840 - 52810446
Alignment:
| Q |
17 |
agctttcttctgttatttttacttttccctcaacgttggatctttgttctccaatactgtattggtctattatgaggacacagggaagtggacaatgggt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52810840 |
agctttcttctgttatttttacttttccctcaacgttggatctttgttctccaatactgtattggtctattatgaggacacggggaagtggacaatgggt |
52810741 |
T |
|
| Q |
117 |
ttctttatatcattgatctctgctatcatagcccttttgacatttttatcaggatctcctaaatatagatacttgaagccatcaggaaaccctgtcgtaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52810740 |
ttctttatatcattgatctctgctatcatagcccttttgacatttttatcaggatctcctaaatatagatacttgaagccatcaggaaaccctgtcgtaa |
52810641 |
T |
|
| Q |
217 |
gggttgctcaggtttttacagctgctgcaaggaaataggttgttgctccagccaaggcagacatactttttgtggttctgggttctagatttgccatcaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
52810640 |
gggttgctcaggtttttacagctgctgctaggaaatgggatgttgctccagccaaggcagacaaactttttgaggttctgggttctagatctgccatcaa |
52810541 |
T |
|
| Q |
317 |
tggttgtagacagaatctcctcagtgctgattttcggtcatctagctctgagataaaacaaaaaattcttatctttaagttgaaccaatcaaagt |
411 |
Q |
| |
|
||||||||| ||| ||| | ||||| ||||||||||| | |||||||||||||||||||||| ||| ||| ||| |||||||||||| |||||| |
|
|
| T |
52810540 |
aggttgtagaaagattctgcacagtgatgattttcggtaagctagctctgagataaaacaaaacattattaacttgaagttgaaccaaacaaagt |
52810446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University