View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2313_high_5 (Length: 386)
Name: NF2313_high_5
Description: NF2313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2313_high_5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 7 - 386
Target Start/End: Original strand, 52810160 - 52810540
Alignment:
| Q |
7 |
ataattagtttcaagtttcataatattttaattaattaaagtagttagtacttgataatcattttacaatccgtctcttgcgataggttaaagggtaaaa |
106 |
Q |
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| T |
52810160 |
ataattattttcaagtttcatgatattttaattaattaaagtagttagtact-gataatcattttacaatccgtctcttgagataggttaaagggtaaaa |
52810258 |
T |
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| Q |
107 |
cccttaccaatgatcattttacaattgtaacgtaggagatttatacttcgtttcttgagatgggttaaagggtaaaactcttaccaatgagttgaaggtc |
206 |
Q |
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| T |
52810259 |
cccttaccaacgatcattttacaattgtaacgtaggagatttatactccgtttcttgagatgggttaaagggtaaaactcttaccaatgagttgaaggtc |
52810358 |
T |
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| Q |
207 |
aaaa---tattattaattaaattcatctaatgtttggggttctttcttccatcttttttagaaattaatatagcttgcttgctatatcactttgtttggt |
303 |
Q |
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| T |
52810359 |
aaaatattattattaattaaattcatctaatgttt-gggttctttcttccatcttttttagaaattaatatagcttgcttgctatatcactttgtttggt |
52810457 |
T |
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| Q |
304 |
tcaacttcaagttaataatgttttgttttatctcagagctagcttaccgaaaatcatcactgtggagaatctttctacaacct |
386 |
Q |
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| T |
52810458 |
tcaacttcaagttaataatgttttgttttatctcagagctagcttaccgaaaatcatcactgtgcagaatctttctacaacct |
52810540 |
T |
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