View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2313_low_1 (Length: 625)
Name: NF2313_low_1
Description: NF2313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2313_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 21 - 615
Target Start/End: Complemental strand, 45654808 - 45654230
Alignment:
| Q |
21 |
ggacgagttgctacttagtacacggttgggtttttgatatcacagttcaactttaattcatacaaaattaattaaaatctcccttaactttatgttttag |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45654808 |
ggacgagttgctacttagtacacggttgggtttttgatatcacagttcaactttaattcatacaaaattaattaaaatctcccttaactttatgttttgg |
45654709 |
T |
|
| Q |
121 |
attcctccnnnnnnnnncttcccttacggccttacattgatccatcaatgcacagtagcctttttagtcttttgaagcactatcggtatcaagtgtatcc |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45654708 |
attcctcctttttttttcttcccttacggccttacattgatccatcaatgcacagtagcctttttagtcttttgaagcactatcggtatcaagtgtatcc |
45654609 |
T |
|
| Q |
221 |
cttagatatttgaacattatatttgaacatcatattattctctatattgttaatatggtatcagagttaaggatagcaatatgaaaattgtattcagagc |
320 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45654608 |
cttagatatttgaacat-------------catattattctctatattgttaatatggtatcagagttaaggatagcaacgtgaaaattgtattcagagc |
45654522 |
T |
|
| Q |
321 |
catgctagccatgagggtcggtattaaaagnnnnnnnaaatttgtttagggtcctacattacttagattctcaaactattaagtgtgtaaatttgttagg |
420 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
45654521 |
catgctagccatgagggtcggtattaaatttttttttaa-tttgtttagagtcctacattacttaggttctcaaactattaagtgtgtaaatgtgttagg |
45654423 |
T |
|
| Q |
421 |
acactcttaatgtcctttgatctctagcttttgggatgatattcaactcatttagcatatagtatcaaaactaacttctctttgttggttattatgtttg |
520 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45654422 |
acactcttaatgtcctttgatctttagcttttgggatgatattcaactcatttagcatatagtatcaaaactaacttctctttattggttattatgtttg |
45654323 |
T |
|
| Q |
521 |
annnnnnnnnnnnctttctatttttcattgattcttctttgagctctctttgttggaatgtttgattcctctttttgattgccttattccctttg |
615 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45654322 |
a--ttttttttttctttctatttttcattgattcttctttgagctctctttgttggaatgtttgattcctctttttgattgccttattctctttg |
45654230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University