View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2313_low_2 (Length: 514)

Name: NF2313_low_2
Description: NF2313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2313_low_2
NF2313_low_2
[»] chr3 (18 HSPs)
chr3 (209-514)||(8518912-8519216)
chr3 (231-510)||(21841446-21841725)
chr3 (209-514)||(18452709-18453013)
chr3 (153-207)||(33745104-33745157)
chr3 (153-207)||(53162203-53162256)
chr3 (153-209)||(25441503-25441558)
chr3 (142-206)||(51505879-51505942)
chr3 (323-394)||(1255867-1255937)
chr3 (148-207)||(21331415-21331473)
chr3 (152-207)||(33404233-33404287)
chr3 (142-196)||(47039443-47039496)
chr3 (142-207)||(10926474-10926538)
chr3 (142-207)||(27185482-27185546)
chr3 (143-207)||(35347288-35347352)
chr3 (142-199)||(45334202-45334258)
chr3 (142-207)||(53996304-53996368)
chr3 (175-207)||(6000692-6000724)
chr3 (175-207)||(20537887-20537919)
[»] chr2 (27 HSPs)
chr2 (209-514)||(25398714-25399018)
chr2 (209-514)||(25403852-25404156)
chr2 (209-514)||(25407841-25408145)
chr2 (209-514)||(19096634-19096938)
chr2 (209-514)||(24953606-24953910)
chr2 (209-514)||(20347675-20347980)
chr2 (14-207)||(34242827-34243022)
chr2 (209-341)||(34199274-34199406)
chr2 (248-406)||(35523572-35523730)
chr2 (142-207)||(9547401-9547465)
chr2 (142-207)||(7350551-7350615)
chr2 (175-207)||(9519738-9519770)
chr2 (142-206)||(19976159-19976223)
chr2 (149-209)||(22571864-22571923)
chr2 (211-334)||(15248182-15248305)
chr2 (142-201)||(36264471-36264529)
chr2 (144-207)||(40967365-40967427)
chr2 (157-207)||(9383216-9383265)
chr2 (153-207)||(23984009-23984063)
chr2 (142-207)||(19967423-19967487)
chr2 (142-207)||(20455896-20455960)
chr2 (153-206)||(25186245-25186297)
chr2 (175-207)||(7262811-7262843)
chr2 (151-207)||(20120722-20120777)
chr2 (153-209)||(24592849-24592904)
chr2 (175-207)||(33063991-33064023)
chr2 (153-205)||(40994780-40994831)
[»] chr4 (23 HSPs)
chr4 (209-514)||(7506703-7507007)
chr4 (209-514)||(9816873-9817177)
chr4 (209-436)||(8378135-8378361)
chr4 (209-399)||(14582236-14582426)
chr4 (151-209)||(48226499-48226556)
chr4 (153-206)||(22040656-22040708)
chr4 (153-206)||(39093578-39093630)
chr4 (149-209)||(10069087-10069146)
chr4 (142-202)||(55962569-55962629)
chr4 (153-208)||(16584952-16585006)
chr4 (142-207)||(9539185-9539249)
chr4 (142-207)||(11949755-11949819)
chr4 (150-207)||(12698602-12698658)
chr4 (153-206)||(28435251-28435303)
chr4 (142-207)||(56497600-56497664)
chr4 (178-207)||(56565010-56565039)
chr4 (151-207)||(10497264-10497319)
chr4 (153-209)||(16431619-16431674)
chr4 (175-207)||(38297947-38297979)
chr4 (151-207)||(42663989-42664044)
chr4 (143-207)||(43374265-43374328)
chr4 (153-209)||(49953406-49953461)
chr4 (175-207)||(56309324-56309356)
[»] chr1 (14 HSPs)
chr1 (209-514)||(49551992-49552296)
chr1 (209-341)||(18495685-18495817)
chr1 (142-207)||(48100727-48100791)
chr1 (153-209)||(26803454-26803509)
chr1 (156-207)||(14520949-14520999)
chr1 (156-207)||(24752653-24752704)
chr1 (142-193)||(33491103-33491154)
chr1 (142-201)||(36467017-36467075)
chr1 (149-207)||(33175266-33175323)
chr1 (142-207)||(49196378-49196442)
chr1 (143-207)||(18166607-18166670)
chr1 (142-206)||(34521182-34521245)
chr1 (153-209)||(40021373-40021429)
chr1 (142-206)||(52043279-52043342)
[»] chr6 (13 HSPs)
chr6 (209-514)||(21233004-21233308)
chr6 (357-514)||(22830523-22830679)
chr6 (209-305)||(22837115-22837211)
chr6 (142-207)||(8629688-8629752)
chr6 (143-207)||(20744143-20744206)
chr6 (142-206)||(24623309-24623372)
chr6 (142-209)||(4455588-4455654)
chr6 (175-209)||(10278456-10278490)
chr6 (162-207)||(3274006-3274050)
chr6 (222-327)||(7387327-7387432)
chr6 (142-207)||(33824886-33824950)
chr6 (142-206)||(16204782-16204845)
chr6 (175-207)||(29740487-29740519)
[»] chr7 (17 HSPs)
chr7 (209-514)||(20143165-20143470)
chr7 (209-514)||(3538741-3539044)
chr7 (142-207)||(35142141-35142205)
chr7 (277-342)||(1462975-1463039)
chr7 (156-209)||(48837870-48837922)
chr7 (154-209)||(47342680-47342734)
chr7 (153-207)||(39926541-39926594)
chr7 (143-197)||(43982089-43982142)
chr7 (156-209)||(9522915-9522967)
chr7 (277-342)||(11497448-11497513)
chr7 (152-205)||(14623487-14623539)
chr7 (153-206)||(40200958-40201010)
chr7 (142-206)||(8227355-8227418)
chr7 (175-207)||(21580821-21580853)
chr7 (142-202)||(24102173-24102233)
chr7 (175-207)||(26825421-26825453)
chr7 (142-206)||(42336076-42336139)
[»] scaffold0026 (1 HSPs)
scaffold0026 (209-514)||(53583-53887)
[»] chr5 (18 HSPs)
chr5 (209-514)||(19481654-19481958)
chr5 (224-514)||(25605476-25605765)
chr5 (209-452)||(25474434-25474677)
chr5 (147-207)||(39610338-39610397)
chr5 (142-209)||(11844430-11844496)
chr5 (153-207)||(40715952-40716005)
chr5 (153-209)||(5846032-5846087)
chr5 (151-207)||(19248484-19248539)
chr5 (142-209)||(20114708-20114774)
chr5 (143-209)||(6327699-6327764)
chr5 (153-207)||(30843405-30843457)
chr5 (142-203)||(12611027-12611087)
chr5 (142-207)||(25603992-25604056)
chr5 (142-207)||(32559309-32559373)
chr5 (151-207)||(1488369-1488425)
chr5 (142-206)||(17861985-17862048)
chr5 (175-207)||(22394040-22394072)
chr5 (142-202)||(40445993-40446052)
[»] scaffold0039 (1 HSPs)
scaffold0039 (213-514)||(87504-87804)
[»] scaffold0064 (1 HSPs)
scaffold0064 (209-482)||(15947-16220)
[»] chr8 (15 HSPs)
chr8 (209-514)||(18406190-18406479)
chr8 (209-404)||(4422367-4422561)
chr8 (209-377)||(11694466-11694633)
chr8 (209-250)||(3803103-3803144)
chr8 (144-207)||(8137940-8138002)
chr8 (142-203)||(26991749-26991809)
chr8 (142-207)||(34420854-34420918)
chr8 (142-206)||(8717467-8717530)
chr8 (142-193)||(16869545-16869595)
chr8 (142-209)||(23159444-23159510)
chr8 (142-189)||(27571841-27571887)
chr8 (175-209)||(6038299-6038333)
chr8 (142-207)||(7996945-7997009)
chr8 (142-207)||(19163528-19163592)
chr8 (175-207)||(27718918-27718950)
[»] scaffold0005 (1 HSPs)
scaffold0005 (209-399)||(234949-235139)
[»] scaffold0566 (1 HSPs)
scaffold0566 (227-341)||(8051-8165)
[»] scaffold0007 (1 HSPs)
scaffold0007 (142-207)||(244484-244549)
[»] scaffold0624 (1 HSPs)
scaffold0624 (227-341)||(2055-2169)
[»] scaffold0350 (1 HSPs)
scaffold0350 (175-209)||(1251-1285)
[»] scaffold0334 (1 HSPs)
scaffold0334 (153-206)||(5188-5240)
[»] scaffold1694 (1 HSPs)
scaffold1694 (148-208)||(159-218)


Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 8518912 - 8519216
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||     
T  8518912 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttccggacgtctcctata 8519011  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  8519012 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctaaaccttaggaataggggacgattttttgg 8519111  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  8519112 ggattctgaggggacatttttaaatgttcccataggttgcttcaattaataatcgttgccttaaatttgaatc-tttaaaaaatcataaaaacgtcccca 8519210  T
Q  509 tagctt 514  Q
    ||||||    
T  8519211 tagctt 8519216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 231 - 510
Target Start/End: Complemental strand, 21841725 - 21841446
Alignment:
Q  231 aacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatgcgagcgtcgcctatagtctatg 330  Q
    ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||||||||  |||||||||||| ||||||||||||||||||||||    
T  21841725 aacaatcgaaaaatgttgccagaactaagaaaaacgtcccctaaaggtataggggacgttttctcggcgtctcctatacgagcgtcgcctatagtctatg 21841626  T
Q  331 gggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttggggattctgaggggacgttttta 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  21841625 gggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctaaaccttaggaatatgagacaattttttggggattctgaggggacgttttta 21841526  T
Q  431 aatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtccccata 510  Q
    ||||||||||||||||||||||||||||||| ||  ||| |||||||||||||||||||||| |||||||||||||||||    
T  21841525 aatgttcccataggttgcttcaattaataatcgtcccctaaaatttgaatcttttaagaaattataaaaacgtccccata 21841446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 209 - 514
Target Start/End: Complemental strand, 18453013 - 18452709
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||| ||||||| ||||||||||||||     
T  18453013 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataggggacgtttttcgggcgtctcctata 18452914  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |    
T  18452913 cgagcgtcgcctatagtctttggggacgacttttcatgttctttgggcacagtttttgaaaacgtcgcctaaaccttaggaataggggacgatttttttg 18452814  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||  ||| |||||||| || ||||||||||||||||||||||||||    
T  18452813 ggattctgaggggacgtttttaaatgtccccttaggttgcttcaattaataatcgtcccctaaaatttgattc-tttaagaaatcataaaaacgtcccca 18452715  T
Q  509 tagctt 514  Q
    ||||||    
T  18452714 tagctt 18452709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 33745157 - 33745104
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||| || ||||||| | ||||||||||||||||||||||||||||||    
T  33745157 tttgaaccccagaccttgcatatt-ttatgcattgtccatatcaattgagctaag 33745104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 53162256 - 53162203
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||    
T  53162256 tttgaacctcaaaccttgcatatt-ttatgcattgtccatatcaattgagctaag 53162203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 25441503 - 25441558
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||| || ||||||| |||||||||||||||||| ||| |||||||||||    
T  25441503 tttgaaccccagaccttgcata-tattatgcattgtccataccaactgagctaagtt 25441558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 51505942 - 51505879
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||| ||||||| ||| ||||||| ||||||| | |||||||||||||||||||| ||||||||    
T  51505942 ggtggccgagattcgaatcccaaaccttgcatatt-ttatgcattgtccatatcaactgagctaa 51505879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 1255867 - 1255937
Alignment:
Q  323 agtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaatagg 394  Q
    ||||| |||||||||||||||| | |||| ||||||||||||| |||||||||| || ||| || |||||||    
T  1255867 agtctttggggacgttttttcacgctctt-gggcacagttttttaaaacgtcgcttataccataagaatagg 1255937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Original strand, 21331415 - 21331473
Alignment:
Q  148 cgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||| ||||||| ||| ||||||| |||||||||||||||||| ||| |||||||||    
T  21331415 cgagattcgaaccccgaaccttgcata-tattatgcattgtccataacaactgagctaag 21331473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 33404287 - 33404233
Alignment:
Q  152 atttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||| |||||||| |||| ||||||| |||||||||||||| |||||||||    
T  33404287 atttgaacctcaaactttacata-tattatgtattgtccatatcaactgagctaag 33404233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 196
Target Start/End: Complemental strand, 47039496 - 47039443
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatca 196  Q
    |||||||| |||| ||||||| |||||||||| |||||||||||||||| |||||    
T  47039496 ggtggtcgggattcgaaccccgaactttgcat-atattatgcattgtccttatca 47039443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 10926538 - 10926474
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| ||| ||||||||||| ||| ||||||| ||||||||||||||| || ||| |||||||||    
T  10926538 ggtggccgacatttgaaccccgaaccttgcata-tattatgcattgtccttaccaactgagctaag 10926474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 27185546 - 27185482
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||| ||||||||||| || |||||| |||||||| ||||||| || ||| |||||||||    
T  27185546 ggtggtcgaggtttgaaccccagaccttgcat-atattatgtattgtccctaccaactgagctaag 27185482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 35347288 - 35347352
Alignment:
Q  143 gtggtcgagatttgaaccccaaactttgcataatattatgca-ttgtccatatcaattgagctaag 207  Q
    ||||||||| ||||||||||| || |||||| |||||||||| ||||||||| ||| |||||||||    
T  35347288 gtggtcgaggtttgaaccccagaccttgcat-atattatgcatttgtccatagcaactgagctaag 35347352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 45334258 - 45334202
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaatt 199  Q
    |||||||| |||||||||||| ||| |||||| |||||||||||||| | ||||||||    
T  45334258 ggtggtcgggatttgaaccccgaaccttgcat-atattatgcattgttcttatcaatt 45334202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 53996368 - 53996304
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| || |||| |||||||| || ||||||| |||||||||||||||||| ||| |||||||||    
T  53996368 ggtggccgggattcgaaccccagaccttgcata-tattatgcattgtccataccaactgagctaag 53996304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 6000692 - 6000724
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||| |||||||||||||||||    
T  6000692 atattatgcattgtctatatcaattgagctaag 6000724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 20537919 - 20537887
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||||||||||| |||||||||    
T  20537919 atattatgcattgtccatatcaactgagctaag 20537887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 25398714 - 25399018
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||     
T  25398714 tacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgtctcctata 25398813  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  25398814 cgagcgtcgcctatagtctatggggacattttttcatgttctttgggcacagtttttgaaaacgtcgcctaagccttaggaataggagacgattttttgg 25398913  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  25398914 ggattctgaggggacgtttttaaatgttcccataggttgctacaattaataatcgttgccttaaatttgaatc-tttaagaaaacataaaaacgtcccca 25399012  T
Q  509 tagctt 514  Q
    ||||||    
T  25399013 tagctt 25399018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 25403852 - 25404156
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||     
T  25403852 tacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgtctcctata 25403951  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  25403952 cgagcgtcgcctatagtctatggggacattttttcatgttctttgggcacagtttttgaaaacgtcgcctaagccttaggaataggagacgattttttgg 25404051  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  25404052 ggattctgaggggacgtttttaaatgttcccataggttgctacaattaataatcgttgccttaaatttgaatc-tttaagaaaacataaaaacgtcccca 25404150  T
Q  509 tagctt 514  Q
    ||||||    
T  25404151 tagctt 25404156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 25407841 - 25408145
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||     
T  25407841 tacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgtctcctata 25407940  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  25407941 cgagcgtcgcctatagtctatggggacattttttcatgttctttgggcacagtttttgaaaacgtcgcctaagccttaggaataggagacgattttttgg 25408040  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||    
T  25408041 ggattctgaggggacgtttttaaatgttcccataggttgctacaattaataatcgttgccttaaatttgaatc-tttaagaaaacataaaaacgtcccca 25408139  T
Q  509 tagctt 514  Q
    ||||||    
T  25408140 tagctt 25408145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 19096634 - 19096938
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||     
T  19096634 tacaccatttatcctttttaacaacaatcgaaaaatgttgtcagaactatgaaaaacgtcccctaaaggtataggggacgttttccgggcatctcctata 19096733  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||   | ||||||||||||||||||||||||    
T  19096734 cgagcgtcgcctatagtctatggggatgttttttcatgttctttgcgcacaatttttgaaaacgtcgcctaagtcataggaataggagacgattttttgg 19096833  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||| ||| ||||||||||||    
T  19096834 ggattcttaggggacgtttttaaatgttcccataggttgcttcaattaataatcgttgccttaaatttgaatc-cttaagaaaacattaaaacgtcccca 19096932  T
Q  509 tagctt 514  Q
    ||||||    
T  19096933 tagctt 19096938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 209 - 514
Target Start/End: Complemental strand, 24953910 - 24953606
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || ||||||| | ||||||||||||     
T  24953910 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtatatgggacgtttttcaggcgtctcctata 24953811  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||  || |||||||||| ||||||||||| |    
T  24953810 cgagcgttgcctatagtctatggggacgttttttcatgatctttgggcacactttttcaaaacgtcgcctaagccctaggaataggggacgatttttttg 24953711  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    |||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||| | ||||||| |||||||| |||||||    
T  24953710 ggattctgaggggacgtttttaaatgttgccataggtttctacaattaataattgttgccttaaatgtgaatc-tgtaagaaaacataaaaatgtcccca 24953612  T
Q  509 tagctt 514  Q
    ||||||    
T  24953611 tagctt 24953606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 209 - 514
Target Start/End: Complemental strand, 20347980 - 20347675
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaa-tgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctat 307  Q
    ||||| |||||||||||||||||| |||  ||||| ||||| || || ||||||||||||| |||||||||||| || | ||||||  ||||||||||||    
T  20347980 tacacaatttatcctttttaacaaaaataaaaaaaatgttgtcagaattatgaaaaacgtcccctaaaggtataagggatgttttctaggcgtctcctat 20347881  T
Q  308 gcgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttg 407  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  20347880 acgagcgtcgcttatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctaagtcttaggaataggagacgattttttg 20347781  T
Q  408 gggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccc 507  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||| || |||||| |||||    
T  20347780 ggaattctgaggggacgtttttaaatgttcccataggttgcttcaattaataatcattgccttaaatttgaatc-tttaagaaaacaaaaaaacttcccc 20347682  T
Q  508 atagctt 514  Q
    | |||||    
T  20347681 acagctt 20347675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 34243022 - 34242827
Alignment:
Q  14 tgtttgatgtgcaacatttagctgaaatgaggcagtcaggcagaccaacactttcaattataataatgaaggagaagaagtcataatccataataaatgt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34243022 tgtttgatgtgcaacatttagctgaaatgaggcagtcaggcagacccacactttcaattataataaggaaggagaagaagtcataatccataataaatgt 34242923  T
Q  114 tcact-tcccnnnnnnnncta-nnnnnnnnggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| ||||        |||         ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34242922 tcactgtcccaaaaaaatctattttttttgggtggtcgaaatttgaaccccaaactttgcataatattatgcattgtccctatcaattgagctaag 34242827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 209 - 341
Target Start/End: Original strand, 34199274 - 34199406
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| || |||||||||||     
T  34199274 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgtttttcgagcgtctcctata 34199373  T
Q  309 cgagcgtcgcctatagtctatggggacgttttt 341  Q
    |||||||||||||||||||||||||||||||||    
T  34199374 cgagcgtcgcctatagtctatggggacgttttt 34199406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 248 - 406
Target Start/End: Original strand, 35523572 - 35523730
Alignment:
Q  248 gccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatgcgagcgtcgcctatagtctatggggacgttttttcatgt 347  Q
    ||||||||| ||||||  ||  |||||| | | |||| ||||||| | |||||||||||| |||||||||||||| ||||| ||||||||||||| |||     
T  35523572 gccaaaactgtgaaaatagttgcctaaaagaacaggggacgtttttcaggcgtctcctattcgagcgtcgcctattgtctaaggggacgtttttttatgc 35523671  T
Q  348 tctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgatttttt 406  Q
    |||||||||||| ||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  35523672 tctttgggcacaatttttgaaaacgtcgcctaaaccattggaataggagacgctttttt 35523730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 9547401 - 9547465
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| | |||||||||||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  9547401 ggtggtcggggtttgaaccccaaaccttgcata-tattatgcattgtccatatcaactgagttaag 9547465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 7350615 - 7350551
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||  ||||||||||| | |||||||||| |||||||||||||||||| ||| |||||||||    
T  7350615 ggtggtcaggatttgaaccctagactttgcata-tattatgcattgtccataccaactgagctaag 7350551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 9519738 - 9519770
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||||||||||||||||||||||||    
T  9519738 atattatgcattgtccatatcaattgagctaag 9519770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 19976223 - 19976159
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    |||||||||| || |||||||  || ||||||| |||||||||||||||||| ||| ||||||||    
T  19976223 ggtggtcgaggttcgaaccccggaccttgcatattattatgcattgtccataccaactgagctaa 19976159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 22571864 - 22571923
Alignment:
Q  149 gagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||||||  || ||||||| |||||||||||||| ||||||| |||||||||||    
T  22571864 gagatttgaaccccggacattgcata-tattatgcattgtctatatcaactgagctaagtt 22571923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 334
Target Start/End: Original strand, 15248182 - 15248305
Alignment:
Q  211 caccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatgcg 310  Q
    |||||||||||||| ||  |||||||  ||||  |||||||||||| ||||||||||  |||||| | |||||| |  |||| |  ||||||| ||| |     
T  15248182 caccatttatccttatttgcaacaattaaaaatcgttgccaaaactgtgaaaaacgttgcctaaaagaataggggatatttttcaagcgtctcatataca 15248281  T
Q  311 agcgtcgcctatagtctatgggga 334  Q
    |||||||||||  |||||||||||    
T  15248282 agcgtcgcctaatgtctatgggga 15248305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 36264471 - 36264529
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattga 201  Q
    |||||||| | |||||||||| |||||||||| |||||||||||| |||||| |||||||    
T  36264471 ggtggtcggggtttgaaccccgaactttgcat-atattatgcattatccataccaattga 36264529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 40967365 - 40967427
Alignment:
Q  144 tggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| |||||||| ||||| ||||||| ||||||||||||||| |||||| |||| ||||    
T  40967365 tggtcgaggtttgaacctcaaaccttgcata-tattatgcattgtccttatcaactgagttaag 40967427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 9383216 - 9383265
Alignment:
Q  157 aaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||| ||||||| |||||||||||||||||| ||| |||||||||    
T  9383216 aaccccaaaccttgcata-tattatgcattgtccataccaactgagctaag 9383265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 23984063 - 23984009
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||  |||||||   ||||||||||||||||||| |||||||||||||    
T  23984063 tttgaaccccgtactttgctatatattatgcattgtccataccaattgagctaag 23984009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 19967487 - 19967423
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||| ||||||| || ||| ||||| | ||||||||||||| |||||||| |||||||||    
T  19967487 ggtggtcgaggtttgaactccgaaccttgcaca-tattatgcattgttcatatcaactgagctaag 19967423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 20455960 - 20455896
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| || |||| |||||||  || ||||||| |||||||||||||||||| |||||||||||||    
T  20455960 ggtggccgggattcgaaccccggaccttgcata-tattatgcattgtccataccaattgagctaag 20455896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 25186245 - 25186297
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||||||||  || ||||||| |||||||||||||||||||||| ||||||||    
T  25186245 tttgaaccccggaccttgcata-tattatgcattgtccatatcaactgagctaa 25186297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 7262843 - 7262811
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||||||||||| |||||||||    
T  7262843 atattatgcattgtccatatcaactgagctaag 7262811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 20120722 - 20120777
Alignment:
Q  151 gatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||| ||| ||||||| ||||||||||||||| || ||| |||||||||    
T  20120722 gatttgaaccccgaaccttgcata-tattatgcattgtccttaccaactgagctaag 20120777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 24592849 - 24592904
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||| || ||||||| ||||||||||||||| || ||| |||||||||||    
T  24592849 tttgaaccccagaccttgcata-tattatgcattgtccctaccaactgagctaagtt 24592904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 33064023 - 33063991
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||||||||||| |||||||||    
T  33064023 atattatgcattgtccatatcaactgagctaag 33063991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 40994780 - 40994831
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagcta 205  Q
    |||||||||| ||| ||||||  ||||||| ||||||||||||||||||||||    
T  40994780 tttgaaccccgaaccttgcatc-tattatgtattgtccatatcaattgagcta 40994831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 7506703 - 7507007
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||     
T  7506703 tacaccatttatcctttttaacaacaatcaaaaaatgttgtcagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgactcctata 7506802  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  7506803 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgtctaaaccttaggaataggagacgattttttgg 7506902  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||    
T  7506903 ggattctgaggggacgtttttaaatgttcccataggttgcttcagttaataatcgttgccttaaacttgaat-atttaagaaatcataaaaacgtcccca 7507001  T
Q  509 tagctt 514  Q
    ||||||    
T  7507002 tagctt 7507007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 9816873 - 9817177
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||| ||||||| ||||||||||||||     
T  9816873 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataggggacgtttttcgggcgtctcctata 9816972  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| |    
T  9816973 cgagcgtcgcctatagtctttggggacgatttttcatgttctttgagcacagtttttgaaaacgtcgcctaaaccttaggaataggggacgatttttttg 9817072  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||  ||| |||||||| || ||||||||||||||||||||||||||    
T  9817073 ggattctgaggggacgtttttaaatgtccccttaggttgcttcaattaataatcgtcccctaaaatttgattc-tttaagaaatcataaaaacgtcccca 9817171  T
Q  509 tagctt 514  Q
    ||||||    
T  9817172 tagctt 9817177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 209 - 436
Target Start/End: Complemental strand, 8378361 - 8378135
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| || ||||||||||||||| || |||||||||||||||||||     
T  8378361 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacttcccctaaaggtataggggacattttccgggcgtctcctata 8378262  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| |    
T  8378261 cgagcgtcgcctatagtctatggggacgttttttcatgatctttgggcacagtttttgaaaacgtcgcctaaaccttaggaat-ggggacgatttttttg 8378163  T
Q  409 ggattctgaggggacgtttttaaatgtt 436  Q
    ||||||||||| |||| |||||||||||    
T  8378162 ggattctgaggagacgcttttaaatgtt 8378135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 209 - 399
Target Start/End: Complemental strand, 14582426 - 14582236
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| |||||||||     
T  14582426 tacaccatttatcctttttaacaacaatcaaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttccgggtgtctcctata 14582327  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacg 399  Q
    |||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| | |||||||||||| ||||    
T  14582326 cgagcgtcacctatagtctatggggacgtttttacatggtctttgggcacagtttttgaaaacatcgcctaaatcttaggaataggggacg 14582236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 48226499 - 48226556
Alignment:
Q  151 gatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||||| || ||||||| | |||||||||||||||| |||||||||||||||    
T  48226499 gatttgaaccccagaccttgcatatt-ttatgcattgtccataccaattgagctaagtt 48226556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 22040708 - 22040656
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    |||||||||| ||| ||||||| |||||||||||||||||||||| ||||||||    
T  22040708 tttgaaccccgaaccttgcata-tattatgcattgtccatatcaactgagctaa 22040656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 39093578 - 39093630
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||||||| |||||||||||| ||||||||||||||| || ||||||||||||    
T  39093578 tttgaaccctaaactttgcata-tattatgcattgtccttaccaattgagctaa 39093630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 10069087 - 10069146
Alignment:
Q  149 gagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||| ||||||||||||||||| ||||||| |||||| |||| ||| |||||||||||    
T  10069087 gagatttaaaccccaaactttgcat-atattatacattgttcataccaactgagctaagtt 10069146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 55962569 - 55962629
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgag 202  Q
    ||||||||||||| ||||||||||| ||  ||| |||||||||||||| ||||||| ||||    
T  55962569 ggtggtcgagattcgaaccccaaaccttatatattattatgcattgtctatatcaactgag 55962629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 16584952 - 16585006
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagt 208  Q
    ||||||| || ||| ||||||| | |||||||||||||||||||||||||||||||    
T  16584952 tttgaactccgaaccttgcatatt-ttatgcattgtccatatcaattgagctaagt 16585006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 9539185 - 9539249
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| |||| ||||||| |||||||| ||||| | |||||||||||||||| ||| |||||||||    
T  9539185 ggtggccgaggtttgaactccaaacttcgcatatt-ttatgcattgtccataacaactgagctaag 9539249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 11949755 - 11949819
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| | ||||||||||  || ||||||| |||||||||||||||||| ||| |||||||||    
T  11949755 ggtggtcggggtttgaaccccggaccttgcata-tattatgcattgtccataccaactgagctaag 11949819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 12698658 - 12698602
Alignment:
Q  150 agatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| |||||||| || ||||||| |||||||||||||||| ||||| |||||||||    
T  12698658 agattcgaaccccagaccttgcata-tattatgcattgtccaaatcaactgagctaag 12698602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 28435251 - 28435303
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    |||||||||| ||| ||||||| |||||||||||||||||| ||| ||||||||    
T  28435251 tttgaaccccgaaccttgcata-tattatgcattgtccataccaactgagctaa 28435303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 56497600 - 56497664
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| || |||| |||||||| || ||||||| ||||||||||||||| || |||||||||||||    
T  56497600 ggtggccgggattcgaaccccagaccttgcata-tattatgcattgtccttaccaattgagctaag 56497664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 207
Target Start/End: Original strand, 56565010 - 56565039
Alignment:
Q  178 ttatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||||||||||||||||||    
T  56565010 ttatgcattgtccatatcaattgagctaag 56565039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 10497319 - 10497264
Alignment:
Q  151 gatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||| |||||||  |||||||||| | |||||||||||||||| |||||||||||||    
T  10497319 gattcgaaccccggactttgcatatt-ttatgcattgtccataccaattgagctaag 10497264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 16431674 - 16431619
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||| || ||||||| | |||||||||||||||| ||| |||||||||||    
T  16431674 tttgaaccccagaccttgcatatt-ttatgcattgtccataccaactgagctaagtt 16431619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 38297979 - 38297947
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||||||||||||||||||| ||||    
T  38297979 atattatgcattgtccatatcaattgaggtaag 38297947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 42664044 - 42663989
Alignment:
Q  151 gatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||| ||||||||| || ||| ||| |||||||| ||||||||||||||||||||||    
T  42664044 gattcgaaccccaacctctgcgtaa-attatgcaatgtccatatcaattgagctaag 42663989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 43374265 - 43374328
Alignment:
Q  143 gtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||| | ||||||| || ||| ||||||| | |||||||||||||||||||| |||||||||    
T  43374265 gtggtcggggtttgaactccgaaccttgcatatt-ttatgcattgtccatatcaactgagctaag 43374328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 49953406 - 49953461
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||  || ||||||| ||||||||||||||||||||| ||||| ||||||    
T  49953406 tttgaaccccggaccttgcata-tattatgcattgtccatatcagttgagttaagtt 49953461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 56309324 - 56309356
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||||||||||||||||||| ||||    
T  56309324 atattatgcattgtccatatcaattgagttaag 56309356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 209 - 514
Target Start/End: Complemental strand, 49552296 - 49551992
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||     
T  49552296 tacaccatttatcctttttaacaacaatcgaaaaatgttgccacaactaagaaaaacgtcccctaaagatataggggacgttttccgggcgtctcctata 49552197  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49552196 caagcgtcgcctatagtctatggggacgatttttcatgttctttgggcacagtttttgaaaacgtcgcctaaaccttaggaataggagacgattttttgg 49552097  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||| ||||||||||| ||||||||||||||||||||||||||    
T  49552096 tgattctgaggggacgtttttaaatgttcccataggttgcttcaattaataatcgtcccctaaaatttgaatc-tttaagaaatcataaaaacgtcccca 49551998  T
Q  509 tagctt 514  Q
    ||||||    
T  49551997 tagctt 49551992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 209 - 341
Target Start/End: Original strand, 18495685 - 18495817
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||| ||||||||||     
T  18495685 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgtttttcggacgtctcctata 18495784  T
Q  309 cgagcgtcgcctatagtctatggggacgttttt 341  Q
    |||||||||||||||||||||||||||||||||    
T  18495785 cgagcgtcgcctatagtctatggggacgttttt 18495817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 48100791 - 48100727
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||| || |||||||||||||| ||||||| | |||||||||||||||| ||| |||||||||    
T  48100791 ggtggtcaaggtttgaaccccaaaccttgcatatt-ttatgcattgtccataccaactgagctaag 48100727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 26803454 - 26803509
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||  |||||||||| |||||||||||||||||| ||| |||||||||||    
T  26803454 tttgaaccccggactttgcata-tattatgcattgtccataccaactgagctaagtt 26803509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 14520999 - 14520949
Alignment:
Q  156 gaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||||||| | |||||||||||||||| ||| |||||||||    
T  14520999 gaaccccaaactttgcatatt-ttatgcattgtccataccaactgagctaag 14520949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 24752653 - 24752704
Alignment:
Q  156 gaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| || ||||||| |||||||||||||||||| ||| |||||||||    
T  24752653 gaaccccagaccttgcatattattatgcattgtccataccaactgagctaag 24752704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 33491154 - 33491103
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccata 193  Q
    |||||||| |||| ||||||| ||| ||||||| ||||||||||||||||||    
T  33491154 ggtggtcgggattcgaaccccgaaccttgcatattattatgcattgtccata 33491103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 36467017 - 36467075
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattga 201  Q
    |||||||| ||||||||||  | || ||||||| ||||||||||||||||||||||||||    
T  36467017 ggtggtcgggatttgaaccttataccttgcata-tattatgcattgtccatatcaattga 36467075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 33175323 - 33175266
Alignment:
Q  149 gagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||| || || || |||| |||||||||||||||||||||||| |||||||    
T  33175323 gagatttgaacctcataccttacata-tattatgcattgtccatatcaattaagctaag 33175266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 49196378 - 49196442
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| ||||||||||||||||||| ||| ||||||||| ||||| ||  ||| |||||||||    
T  49196378 ggtggtcgggatttgaaccccaaactttacat-atattatgcgttgtctatggcaactgagctaag 49196442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 18166670 - 18166607
Alignment:
Q  143 gtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||| | ||||||||||  |||||||||| |||||||||||||| ||| ||| |||||||||    
T  18166670 gtggtcggggtttgaaccccggactttgcata-tattatgcattgtctataccaactgagctaag 18166607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 34521182 - 34521245
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||| |||| ||||||||||  || ||||||| |||||||||||||||||| ||| ||||||||    
T  34521182 ggtggccgaggtttgaaccccggaccttgcata-tattatgcattgtccataccaactgagctaa 34521245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 40021429 - 40021373
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    |||||||| || || ||| ||| |||||||||||||||||| ||| |||||||||||    
T  40021429 tttgaacctcagaccttgtatattattatgcattgtccataccaactgagctaagtt 40021373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 52043342 - 52043279
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    |||||||| |||||||||||| ||| |||||| || ||||||||| |||||| ||| ||||||||    
T  52043342 ggtggtcgggatttgaaccccgaacattgcat-attttatgcattatccataccaactgagctaa 52043279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 238; Significance: 1e-131; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 209 - 514
Target Start/End: Complemental strand, 21233308 - 21233004
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| |||| || | |||||||||| |||||||||     
T  21233308 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactatgaaaaacgccccctaaagatatatgggaggttttccgggtgtctcctata 21233209  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||    
T  21233208 cgagcgtcgcctatagtctttggggacgttttttcatgttctttgggcacagttttttaaaacgtcgcctaagccttaggaataggagacgattttttgg 21233109  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  21233108 ggattctgaggggacgtttttaaatgttcccatagtttgcttcaattaataatcgttgccttaaatttgaatc-tttaagaaatcataaaaacgtcccca 21233010  T
Q  509 tagctt 514  Q
    ||||||    
T  21233009 tagctt 21233004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 357 - 514
Target Start/End: Complemental strand, 22830679 - 22830523
Alignment:
Q  357 acagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttggggattctgaggggacgtttttaaatgttcccataggttgcttcaatta 456  Q
    |||||||||| |||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22830679 acagtttttgtaaacgtcgcctaaaccttaggaatatgagatgattttttggggattctgaggggacgtttttaaatgttcccataggttgcttcaatta 22830580  T
Q  457 ataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtccccatagctt 514  Q
    ||||| ||  ||| ||||||||||| ||||||||||||||||||||||||||||||||    
T  22830579 ataatcgtcccctaaaatttgaatc-tttaagaaatcataaaaacgtccccatagctt 22830523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 22837211 - 22837115
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcct 305  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||||||||| |||||||||||||| |||||    
T  22837211 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaagaaaaacgtcccctaacggtataggggacgttttccgggcgactcct 22837115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 8629688 - 8629752
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||| |||||||||| ||| ||||||| |||||||||||||||||| |||||||| ||||    
T  8629688 ggtggtcgaggtttgaaccccgaaccttgcata-tattatgcattgtccataccaattgagttaag 8629752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Complemental strand, 20744206 - 20744143
Alignment:
Q  143 gtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||| | ||||||||||| || ||||||| |||||||||||||||||| ||| |||||||||    
T  20744206 gtggtcggggtttgaaccccagaccttgcata-tattatgcattgtccataccaactgagctaag 20744143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 24623309 - 24623372
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    |||||||| | |||||||||| ||| || |||| |||||||||||||||||||||| ||||||||    
T  24623309 ggtggtcggggtttgaaccccgaaccttacata-tattatgcattgtccatatcaactgagctaa 24623372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 4455588 - 4455654
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    |||||||| | ||||||||||| || ||||||| |||||||| ||||||||| ||| |||||||||||    
T  4455588 ggtggtcggggtttgaaccccagaccttgcata-tattatgccttgtccataccaactgagctaagtt 4455654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 10278490 - 10278456
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaagtt 209  Q
    |||||||||||||||||||||||||||| ||||||    
T  10278490 atattatgcattgtccatatcaattgagttaagtt 10278456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 3274050 - 3274006
Alignment:
Q  162 caaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| |||| |||||||||||||||||||||||||| |||||    
T  3274050 caaactttacata-tattatgcattgtccatatcaattgaactaag 3274006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 327
Target Start/End: Complemental strand, 7387432 - 7387327
Alignment:
Q  222 ctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatgcgagcgtcgccta 321  Q
    ||||||| ||||| | ||||| |||||||| |||| ||||||||||  |||||| | |||||  | | ||| | ||||||||||||| |||||| |||||    
T  7387432 ctttttagcaacagttgaaaattgttgccagaactgtgaaaaacgttgcctaaaagaataggcgatgattttcaggcgtctcctatgtgagcgttgccta 7387333  T
Q  322 tagtct 327  Q
    | ||||    
T  7387332 ttgtct 7387327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 33824950 - 33824886
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| |||| ||||||||||  || ||||||| ||||||||||||||| |||||| |||||||||    
T  33824950 ggtggccgaggtttgaaccccggaccttgcata-tattatgcattgtccttatcaactgagctaag 33824886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 16204782 - 16204845
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    |||||||| ||||||||||||  || |||||||  |||||||||||||||||||||  |||||||    
T  16204782 ggtggtcgggatttgaaccccggaccttgcatac-attatgcattgtccatatcaaccgagctaa 16204845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 29740519 - 29740487
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||||||| |||||||||||||    
T  29740519 atattatgcattgtccataccaattgagctaag 29740487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 20143165 - 20143470
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||     
T  20143165 tacaccatttatcctttttaacaacaatcgaaaaatgtagccagaactatgaaaaacgtcccctaaaggtataggggacgttttctgggcgtctcctata 20143264  T
Q  309 cgagcgtcgcctatagtctatgggg-acgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttg 407  Q
    ||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20143265 cgagcgtcgcctatagtctgtgggggacgttttctcatgttcttttggcacagtttttgaaaacgtcgcctaagccttaggaataggagacgattttttg 20143364  T
Q  408 gggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccc 507  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||||||||||    
T  20143365 gggattctgaggggacgtttttaaatgtttccataggttgcttcaattaataatcgttgccttaaatttaaatc-tttaagaaaacataaaaacgtcccc 20143463  T
Q  508 atagctt 514  Q
    |||||||    
T  20143464 atagctt 20143470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 3538741 - 3539044
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||| ||| || |||||||||||||||||| ||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||     
T  3538741 tacaccatttatcctttataaaaataatcgaaaaatgttgccagaactatgaaaatcgttgcctaaaggtataggggacgttttccgggcgtctcctata 3538840  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||  || |||||||||| ||||||||||| |    
T  3538841 ctagcgtcgcctatagtctatggggacgttttttcatgatctttgggcacactttttcaaaacgtcgcctatgccctaggaataggggacgattttttag 3538940  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||  |||||||| ||||||||||||||||    
T  3538941 ggattctaagaggacgtttttaaatgttcccataggttgcttcaattaataatcgttgccttaaatgtgaatc--ttaagaaaacataaaaacgtcccca 3539038  T
Q  509 tagctt 514  Q
    ||||||    
T  3539039 tagctt 3539044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 35142141 - 35142205
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| | || ||||| ||||||||||||| |||||||||||||||||||||| |||||||||    
T  35142141 ggtggtcggggttcgaacctcaaactttgcata-tattatgcattgtccatatcaactgagctaag 35142205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 277 - 342
Target Start/End: Original strand, 1462975 - 1463039
Alignment:
Q  277 gtatagggaacgttttccgggcgtctcctatgcgagcgtcgcctatagtctatggggacgtttttt 342  Q
    |||||||| ||||||| | || ||||||||| ||||||||||||||||||||  ||||||||||||    
T  1462975 gtataggggacgtttttcaggtgtctcctatacgagcgtcgcctatagtcta-agggacgtttttt 1463039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 48837922 - 48837870
Alignment:
Q  156 gaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||| ||||||    
T  48837922 gaaccccaaactttgcata-tattatgcattatccataccaattgagttaagtt 48837870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 47342734 - 47342680
Alignment:
Q  154 ttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||||| ||||||| | |||||||||||||||| ||| |||||||||||    
T  47342734 ttgaaccccaaaccttgcatatt-ttatgcattgtccataccaactgagctaagtt 47342680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 39926541 - 39926594
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||| ||| ||||||| ||||||||||||||| |||||| |||||||||    
T  39926541 tttgaaccccgaacattgcata-tattatgcattgtccttatcaactgagctaag 39926594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 197
Target Start/End: Complemental strand, 43982142 - 43982089
Alignment:
Q  143 gtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaa 197  Q
    |||||||||||| ||| |||||||||| ||| |||||||||||||||| ||||||    
T  43982142 gtggtcgagattggaatcccaaactttacat-atattatgcattgtccttatcaa 43982089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 9522967 - 9522915
Alignment:
Q  156 gaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||| ||||||| ||||||||||||| |||| ||| |||||||||||    
T  9522967 gaaccccaaaccttgcata-tattatgcattgttcataccaactgagctaagtt 9522915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 342
Target Start/End: Complemental strand, 11497513 - 11497448
Alignment:
Q  277 gtatagggaacgttttccgggcgtctcctatgcgagcgtcgcctatagtctatggggacgtttttt 342  Q
    |||||||| |||||||   || ||||||||| | ||||| |||||||||||| |||||||||||||    
T  11497513 gtataggggacgttttttaggtgtctcctatacaagcgttgcctatagtctaaggggacgtttttt 11497448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 205
Target Start/End: Original strand, 14623487 - 14623539
Alignment:
Q  152 atttgaaccccaaactttgcataatattatgcattgtccatatcaattgagcta 205  Q
    ||||||||||||||| || |||| | |||||||||||||||||||| |||||||    
T  14623487 atttgaaccccaaaccttacatatt-ttatgcattgtccatatcaaatgagcta 14623539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 40200958 - 40201010
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||||| ||||||  |||||| ||||||| |||||||||||||||||||||||    
T  40200958 tttgaactccaaaccctgcata-tattatgtattgtccatatcaattgagctaa 40201010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 8227418 - 8227355
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||||||||||| ||||||   ||||| |||| ||||||||||||||| |||||| ||||||||    
T  8227418 ggtggtcgagattcgaaccctggactttacata-tattatgcattgtccttatcaactgagctaa 8227355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 21580853 - 21580821
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||||||||||||||||||| ||||    
T  21580853 atattatgcattgtccatatcaattgagttaag 21580821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 24102173 - 24102233
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgag 202  Q
    |||||||| ||||||||| || ||| ||| ||| | |||| ||||||||||||||||||||    
T  24102173 ggtggtcgggatttgaactccgaaccttgtatatttttatacattgtccatatcaattgag 24102233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 26825421 - 26825453
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||||||||||||||||||| ||||    
T  26825421 atattatgcattgtccatatcaattgaggtaag 26825453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 42336139 - 42336076
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||||||||||| |||||||  || ||||||  ||||||||||||||| |||||| ||||||||    
T  42336139 ggtggtcgagattcgaaccccggaccttgcatg-tattatgcattgtccttatcaactgagctaa 42336076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 53583 - 53887
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| || || | |||||||| ||||||||||||||| ||||||||||||||||||||||     
T  53583 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaattaaggaaaacgtcccctaaaggtataggggacgttttccgggcgtctcctata 53682  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |    
T  53683 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctaaaccttaggaataggggacgatttttttg 53782  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  ||| |||||||| || ||||||||||| ||||||||||||||    
T  53783 ggattctgaggggacgtttttaaatgtccccataggttgcttcaattaataatcgtcccctaaaatttgattc-tttaagaaatcttaaaaacgtcccca 53881  T
Q  509 tagctt 514  Q
    ||||||    
T  53882 tagctt 53887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 209 - 514
Target Start/End: Original strand, 19481654 - 19481958
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |||||||||||| || ||||||||||||||||||||||     
T  19481654 tacaccatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataagggacgttttccgggcgtctcctata 19481753  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| ||| |    
T  19481754 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtctcctacaccttaggaataggggacgattgttttg 19481853  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||  ||| |||||||| || ||||||||||||||||||||||||||    
T  19481854 ggattctgaggggacgtttttaaatgtccccataggttgcttcaattaataatcgtcccctaaaatttgattc-tttaagaaatcataaaaacgtcccca 19481952  T
Q  509 tagctt 514  Q
    ||||||    
T  19481953 tagctt 19481958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 224 - 514
Target Start/End: Complemental strand, 25605765 - 25605476
Alignment:
Q  224 ttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatgcgagcgtcgcctata 323  Q
    |||||||||||||||||||||||| ||| ||| |||||||| ||| |||||| |||||||| || ||||  ||||||||||||| |||||||||||||||    
T  25605765 ttttaacaacaatcgaaaaatgttaccagaacaatgaaaaatgtcccctaaaagtataggggacattttttgggcgtctcctatacgagcgtcgcctata 25605666  T
Q  324 gtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttggggattctgaggggac 423  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  25605665 gtctatggggacgttttttcatgttctttgggcacaatttttgaaaacgtcgcctaaaccttaggaataggagacgattttttggggattctgaggggac 25605566  T
Q  424 gtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtccccatagctt 514  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  25605565 gtttttaaatgttcccataggttgcttcaattaataatcgttgccttaaatttgaatc-tttaagaaaacataaaaacgtccccatagctt 25605476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 209 - 452
Target Start/End: Original strand, 25474434 - 25474677
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||| | |||||||| ||||||||||||||| ||||||||||  | ||||||||     
T  25474434 tacatcatttatcctttttaacaacaatcgaaaaatgttgccagaactaaggaaaacgtcccctaaaggtataggggacgttttccgaacatctcctata 25474533  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25474534 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctaaaccttaggaataggagacgattttttgg 25474633  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttca 452  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  25474634 ggattctgaggggacgtttttaaatgtccccataggttgcttca 25474677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 39610338 - 39610397
Alignment:
Q  147 tcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| ||||||| |||||| ||||||| |||||||||||||||||||||| |||||||||    
T  39610338 tcgaggtttgaactccaaacattgcata-tattatgcattgtccatatcaactgagctaag 39610397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 11844430 - 11844496
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||||| |||||| |||| ||||||| ||||||||||||||| || ||| |||||||||||    
T  11844430 ggtggtcgagattcgaaccctaaaccttgcata-tattatgcattgtccttaccaactgagctaagtt 11844496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 40715952 - 40716005
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||  || ||||||| ||||||||||||||||||||||||||||||||    
T  40715952 tttgaaccccggaccttgcata-tattatgcattgtccatatcaattgagctaag 40716005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 209
Target Start/End: Complemental strand, 5846087 - 5846032
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||| |||||||||| ||||||||||||||| || ||| |||||||||||    
T  5846087 tttgaaccccagactttgcata-tattatgcattgtccttaccaactgagctaagtt 5846032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 19248539 - 19248484
Alignment:
Q  151 gatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||||||| ||||||| |||||||||||||| ||| ||| |||||||||    
T  19248539 gatttgaaccccaaacattgcata-tattatgcattgtctataccaactgagctaag 19248484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 20114774 - 20114708
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    |||||||| |||||||||| ||||||||| ||| | ||||||||||||| || ||| |||||||||||    
T  20114774 ggtggtcgggatttgaacctcaaactttgtatatt-ttatgcattgtccttaccaactgagctaagtt 20114708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 143 - 209
Target Start/End: Complemental strand, 6327764 - 6327699
Alignment:
Q  143 gtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||| | ||||||||  |||||||||||| ||||||||||||||| ||  ||||||||||||||    
T  6327764 gtggtcggggtttgaaccataaactttgcata-tattatgcattgtccttactaattgagctaagtt 6327699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 207
Target Start/End: Original strand, 30843405 - 30843457
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||||||||| ||| |||||||||||||||||| ||| |||||||||    
T  30843405 tttgaaccccaaactttgaata-tattatgcattgtccataccaa-tgagctaag 30843457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 12611027 - 12611087
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagc 203  Q
    |||||||||| || |||||||| || ||||||| | |||||||||||||||| |||||||||    
T  12611027 ggtggtcgaggttcgaaccccagaccttgcatatt-ttatgcattgtccataccaattgagc 12611087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 25603992 - 25604056
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| || |||| ||||||| ||| ||||||| ||||||||| |||||||||||| |||||||||    
T  25603992 ggtggccgggattcgaaccccgaaccttgcata-tattatgcactgtccatatcaactgagctaag 25604056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 32559373 - 32559309
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    ||||| || ||||||||||||| || || |||| | |||||||||||| |||||||||||||||||    
T  32559373 ggtggccgggatttgaaccccagaccttacatatt-ttatgcattgtcaatatcaattgagctaag 32559309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 151 - 207
Target Start/End: Complemental strand, 1488425 - 1488369
Alignment:
Q  151 gatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||||| ||  ||||||| | |||||||||||||||| ||| |||||||||    
T  1488425 gatttgaaccccgaatcttgcatatttttatgcattgtccataccaactgagctaag 1488369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 17862048 - 17861985
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||| ||| ||||||||||  ||||||||||| ||||||||||||||| || ||| ||||||||    
T  17862048 ggtggacgaaatttgaaccctgaactttgcata-tattatgcattgtccctaccaactgagctaa 17861985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 22394072 - 22394040
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||||||||||| |||||||||    
T  22394072 atattatgcattgtccatatcaactgagctaag 22394040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 40446052 - 40445993
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgag 202  Q
    |||| |||||||||||||| || || ||||||| ||||||||||||||| |||||| ||||    
T  40446052 ggtgatcgagatttgaacctcagaccttgcata-tattatgcattgtccttatcaactgag 40445993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 213 - 514
Target Start/End: Complemental strand, 87804 - 87504
Alignment:
Q  213 ccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatgcgag 312  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||   |||||||||||||| |||||||| ||| | ||||||| ||||    
T  87804 ccatttatcctttataacaacaattgaaaaatgttgccagaactatgaaaagcgttggctaaaggtataggggacgttttctgggtgcctcctatacgag 87705  T
Q  313 cgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttggggat 412  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| ||||  || |||||||||| ||  |||||||||||||    
T  87704 cgtcgcctatagtctatggggacgttttttcatgatctttgggcacactttttcaaaacgtcacctaagccctaggaataggggataattttttggggat 87605  T
Q  413 tctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtccccatagc 512  Q
    | |||||||||| || ||||||||  |||| |||||| ||||||||||| |||||||||||| |||||| | ||||||| ||||||||||||||||||||    
T  87604 tttgaggggacgcttataaatgttgtcataagttgctacaattaataatcgttgccttaaatgtgaatc-tataagaaaacataaaaacgtccccatagc 87506  T
Q  513 tt 514  Q
    ||    
T  87505 tt 87504  T

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Target: scaffold0064 (Bit Score: 158; Significance: 7e-84; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 209 - 482
Target Start/End: Complemental strand, 16220 - 15947
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||  | ||||||||||||| |||||||| ||||||||| |||     
T  16220 tacaccatttatcctttataacaacaattgaaaaatgttgccagaactatgaaaagcgttgcttaaaggtataggggacgttttctgggcgtctcttata 16121  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||| | |||||||||||  || |||||||||  ||||||||||| |    
T  16120 cgagcgtcgcctatagtctatggggacgttctttcatgatctttgagcacagtttttcataacgtcgcctaagccctaggaatagaggacgattttttag 16021  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatct 482  Q
    ||||| |||||||||| || |||||||| |||||||||||| ||||||||||| |||||||||||| |||||||    
T  16020 ggattttgaggggacgcttataaatgttgccataggttgctacaattaataatcgttgccttaaatgtgaatct 15947  T

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Target: chr8 (Bit Score: 140; Significance: 4e-73; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 209 - 514
Target Start/End: Complemental strand, 18406479 - 18406190
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||| |||||| ||| ||||||| |||||| ||||||||||| |||  ||||||||||||||| ||||||||||| ||||           
T  18406479 tacaccatttatcctttataacaataattgaaaaatattgccagaactatgaaaatcgttgcctaaaggtataggggacgttttccggacgtc------- 18406387  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgattttttgg 408  Q
            |||||||||||||||||||||||||||||  |||||||||||| ||||| |||  || |||||  || |||||||||| |||||||||||||    
T  18406386 --------gcctatagtctatggggacgttttttcataatctttgggcacactttttcaaagtgttgcctaagccataggaataggggacgattttttgg 18406295  T
Q  409 ggattctgaggggacgtttttaaatgttcccataggttgcttcaattaataattgttgccttaaatttgaatcttttaagaaatcataaaaacgtcccca 508  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||  ||| |||||||||||    
T  18406294 ggattctgaggggacatttttaaatgttcccataggttgcttcaattaataatcgttgccttaaatgtgaatc-tttaagaaaatatataaacgtcccca 18406196  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 209 - 404
Target Start/End: Complemental strand, 4422561 - 4422367
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    |||||||||||||||| | ||||||| | |||||||||||||| ||||||||||| |||| |||||| |||||||| | |||||   |||||||||||||    
T  4422561 tacaccatttatccttat-aacaacatttgaaaaatgttgccagaactatgaaaagcgtcgcctaaaagtataggggatgtttttaaggcgtctcctatg 4422463  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacgatttt 404  Q
    ||| ||||||||||||||||||| |||||||||||||| |||||| ||||  ||||| |||| |||||||| ||| |||||||||| |||||||||    
T  4422462 cgaacgtcgcctatagtctatggagacgttttttcatgatctttgagcacgctttttcaaaatgtcgcctaaaccctaggaataggggacgatttt 4422367  T

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Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 209 - 377
Target Start/End: Complemental strand, 11694633 - 11694466
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    |||| |||||||||||| || ||||| | |||||| ||||||  ||||||||||| |||| |||||  | ||||| |||| ||| | |||||||||||||    
T  11694633 tacagcatttatcctttatagcaacagttgaaaaacgttgcccgaactatgaaaatcgtcccctaagagaataggaaacgcttttcaggcgtctcctatg 11694534  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcc 377  Q
    ||||||||||||||  |||||||||||||||||| ||| |||||||||||| |||| |||| |||||||    
T  11694533 cgagcgtcgcctattatctatggggacgtttttt-atgatctttgggcacacttttagaaagcgtcgcc 11694466  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Complemental strand, 3803144 - 3803103
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgcc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  3803144 tacaccatttatcctttttaacaacaatcgaaaaatgttgcc 3803103  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 8138002 - 8137940
Alignment:
Q  144 tggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||| | ||||||||||||||||||||| || |||||||||||||||| ||| |||||||||    
T  8138002 tggtcggggtttgaaccccaaactttgcat-attttatgcattgtccataccaactgagctaag 8137940  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 26991749 - 26991809
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagc 203  Q
    |||||||| | |||||||| ||||| ||||||| |||||||||||||||||||||| |||||    
T  26991749 ggtggtcgtggtttgaaccacaaaccttgcata-tattatgcattgtccatatcaactgagc 26991809  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 34420854 - 34420918
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||||| |||||||| ||||| ||||||| | |||||||||||||||| |||||||| ||||    
T  34420854 ggtggtcgaggtttgaacctcaaaccttgcatatt-ttatgcattgtccataccaattgagttaag 34420918  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 8717467 - 8717530
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    ||||| |||| |||||||||| ||| ||||||| |||||||||||||||||| ||| ||||||||    
T  8717467 ggtggccgaggtttgaaccccgaaccttgcata-tattatgcattgtccataccaactgagctaa 8717530  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 16869595 - 16869545
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccata 193  Q
    ||||| || |||||||||||| ||||||||| ||||||||||||||||||||    
T  16869595 ggtggccgggatttgaaccccgaactttgca-aatattatgcattgtccata 16869545  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 23159510 - 23159444
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagtt 209  Q
    |||||||| | |||||||||| ||  ||||||| ||||||||||||||||||| ||||||| ||||||    
T  23159510 ggtggtcggggtttgaaccccgaatcttgcata-tattatgcattgtccatatgaattgagttaagtt 23159444  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 27571841 - 27571887
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtc 189  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||    
T  27571841 ggtggtcgggatttgaaccccaaaccttgcat-atattatgcattgtc 27571887  T

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Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 6038299 - 6038333
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||||||||||||||| |||||||||||    
T  6038299 atattatgcattgtccatatcaactgagctaagtt 6038333  T

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Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 7997009 - 7996945
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| | ||||||||||| || |||||| ||||||||| ||||||||| ||| |||||||||    
T  7997009 ggtggtcggggtttgaaccccagaccttgcat-atattatgcgttgtccataccaactgagctaag 7996945  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 207
Target Start/End: Original strand, 19163528 - 19163592
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| | ||||||||||  || |||||||| ||||||||||||||||| ||| |||||||||    
T  19163528 ggtggtcggggtttgaaccccggaccttgcataa-attatgcattgtccataccaactgagctaag 19163592  T

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Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 27718918 - 27718950
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaag 207  Q
    ||||||||||||||||||||||| |||||||||    
T  27718918 atattatgcattgtccatatcaactgagctaag 27718950  T

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Target: scaffold0005 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 209 - 399
Target Start/End: Original strand, 234949 - 235139
Alignment:
Q  209 tacaccatttatcctttttaacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatg 308  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||| |||||||||     
T  234949 tacaccatttatcctttttaacaacaatcaaaaaatgttgccagaactatgaaaaacgtcccctaaaggtataggggacgttttccgggtgtctcctata 235048  T
Q  309 cgagcgtcgcctatagtctatggggacgttttttcatgttctttgggcacagtttttgaaaacgtcgcctacaccttaggaataggagacg 399  Q
    |||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||| | |||||||||||| ||||    
T  235049 cgagcgtcacctatagtctatggggacgtttttacatggtctttgggcacagtttttgaaaacatcgcctaaatcttaggaataggggacg 235139  T

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Target: scaffold0566 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 8165 - 8051
Alignment:
Q  227 taacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatgcgagcgtcgcctatagtc 326  Q
    |||||||||  |||||| ||||||| ||||||||||| |||  || ||    |||||| ||||||| | ||||||| |||| ||||||||||||||||||    
T  8165 taacaacaactgaaaaacgttgccagaactatgaaaatcgttgccaaagacaataggggacgtttttcaggcgtcttctatacgagcgtcgcctatagtc 8066  T
Q  327 tatggggacgttttt 341  Q
    || ||||||| ||||    
T  8065 taaggggacgctttt 8051  T

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Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 142 - 207
Target Start/End: Complemental strand, 244549 - 244484
Alignment:
Q  142 ggtggtcgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaag 207  Q
    |||||||| ||||| |||||||||| || |||| | |||||||||||||||||||| |||||||||    
T  244549 ggtggtcgggattttaaccccaaaccttacatatttttatgcattgtccatatcaactgagctaag 244484  T

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Target: scaffold0624 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0624
Description:

Target: scaffold0624; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 227 - 341
Target Start/End: Complemental strand, 2169 - 2055
Alignment:
Q  227 taacaacaatcgaaaaatgttgccaaaactatgaaaaacgtctcctaaaggtatagggaacgttttccgggcgtctcctatgcgagcgtcgcctatagtc 326  Q
    |||||||| |||||||  ||||||| |||||||||||  ||  || ||  | |||||| ||| |||   ||||||| |||| ||||||||||||||||||    
T  2169 taacaacagtcgaaaatcgttgccagaactatgaaaattgttgccaaagagaataggggacgattttgaggcgtcttctatacgagcgtcgcctatagtc 2070  T
Q  327 tatggggacgttttt 341  Q
    || ||| ||||||||    
T  2069 taagggcacgttttt 2055  T

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Target: scaffold0350 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0350
Description:

Target: scaffold0350; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 209
Target Start/End: Complemental strand, 1285 - 1251
Alignment:
Q  175 atattatgcattgtccatatcaattgagctaagtt 209  Q
    ||||||||||||||||||||||| |||||||||||    
T  1285 atattatgcattgtccatatcaactgagctaagtt 1251  T

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Target: scaffold0334 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 5240 - 5188
Alignment:
Q  153 tttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaa 206  Q
    |||||||| || || ||||||| |||||||||||||||||| ||||||||||||    
T  5240 tttgaacctcagaccttgcata-tattatgcattgtccataccaattgagctaa 5188  T

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Target: scaffold1694 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 148 - 208
Target Start/End: Complemental strand, 218 - 159
Alignment:
Q  148 cgagatttgaaccccaaactttgcataatattatgcattgtccatatcaattgagctaagt 208  Q
    |||| |||||||| || || |||||||  ||||||||||||||||||||| ||||||||||    
T  218 cgaggtttgaacctcagaccttgcatac-attatgcattgtccatatcaactgagctaagt 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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