View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2313_low_3 (Length: 442)
Name: NF2313_low_3
Description: NF2313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2313_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 101 - 302
Target Start/End: Complemental strand, 8885804 - 8885603
Alignment:
| Q |
101 |
tctataattagtatcttaattcttaattaaaagggtcataaaaagacatgttttataaagagaaagtgtgatgagataagataataccgcgagaacagtg |
200 |
Q |
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| T |
8885804 |
tctataattagtatcttaattcttaattaaaagggtcataaaaagacatgttttataaagagaaagtgtgatgagataagataataccgcgagaacagtg |
8885705 |
T |
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| Q |
201 |
tcacagaaattgcaatggacataacaaagctggtccgaaggagagagttgttgctgttgttgctggtccggtgaaaaggaagtggatgatgaagaggaca |
300 |
Q |
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| T |
8885704 |
tcgcagaaattgcaatggacataacaaagctggtccgaaggagagagttgttgctgttgttgctggtccggtgaaaaggaagtggatgatgaagaggaca |
8885605 |
T |
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| Q |
301 |
tg |
302 |
Q |
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|| |
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| T |
8885604 |
tg |
8885603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 8885526 - 8885463
Alignment:
| Q |
379 |
gggattgactgatcagtgaagtttcttgggtgtgtgatatgatagatagatagatataaacttc |
442 |
Q |
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| T |
8885526 |
gggattgactgatcagtgaagtttcttgggtgtgtgatatgatagatagatagatataaacttc |
8885463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 8885887 - 8885830
Alignment:
| Q |
16 |
caatgaccacatctcactgtcacagtcttgaacaaacttgtgcaaggaacactcacct |
73 |
Q |
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| T |
8885887 |
caatgaccacatctcactgtcacagtcttgaacaaacttgtgcaaggaacactcacct |
8885830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 42026257 - 42026314
Alignment:
| Q |
16 |
caatgaccacatctcactgtcacagtcttgaacaaacttgtgcaaggaacactcacct |
73 |
Q |
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| T |
42026257 |
caatgaccgcatctcacagtcacggtcttgaacaagcttgtgcaaggaacactcacct |
42026314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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