View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2313_low_6 (Length: 203)
Name: NF2313_low_6
Description: NF2313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2313_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 34817001 - 34816812
Alignment:
| Q |
9 |
aatgaaacaacaaatccatctttcacgaatctccaccaatagacaaccccatatataagaagagaagacacccaattttataattaataaccaaagacac |
108 |
Q |
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| T |
34817001 |
aatgaaacaacaaattcatctttcacgaatctccaccaatagacaaccccatgtataagaagagaagacacccaattttataattaataaccaaagacgc |
34816902 |
T |
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| Q |
109 |
ctcatttagccaagagtcggctacattaaccccaaatatgtac--nnnnnnnnggacaaaatattatatttgcaattaaataaaggagaa |
196 |
Q |
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| T |
34816901 |
ctcatttagccaagagtcggctacattaaccccaaatgtgtacttttcttttttgacaaaatattatatttgcaattaaataaaggagaa |
34816812 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 35417753 - 35417702
Alignment:
| Q |
34 |
cgaatctccaccaatagacaaccccatatataagaagagaagacacccaattt |
86 |
Q |
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| T |
35417753 |
cgaatcaccaccaatagacgaccccaaatataaaaag-gaagacacccaattt |
35417702 |
T |
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