View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_high_1 (Length: 737)
Name: NF2314_high_1
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 507
Target Start/End: Original strand, 40351218 - 40351696
Alignment:
| Q |
13 |
attctcacgtaggtagatgctaactttcttttagaaatgagtttggatgagaattgatttctaaaattaaactcatcatcaaatatatgtttaaaatgtt |
112 |
Q |
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| T |
40351218 |
attcttacgtaagtagatgttaactttcttttagaattgagtttggatgaaaatttgtttctaaaattaaactcattatcaaatatatgtttaaaatgtt |
40351317 |
T |
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| Q |
113 |
gaatcacattttattggtatcatgtgtttaaatttttaaaatctcaaatacatcaataatctcgaacccataactctatcatcttcatcaccctccttct |
212 |
Q |
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| T |
40351318 |
gaatcacatttt-ttggtattatgtgtttgaatctttaaaatcttaaatacatcaataatctcgaacccataattctatcatctttataattctctttct |
40351416 |
T |
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| Q |
213 |
ttaatctatttgacttacatctgacaatgattcttatgccactagaaatccacaaatgaacatgtaatttgaattttatattttaaacatttaacatgta |
312 |
Q |
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| T |
40351417 |
ttaatctatttgatcta----------------ttatgccactagaaatccacaaatgaacatgtaatttgaattttatattttaaacatttaacatgta |
40351500 |
T |
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| Q |
313 |
aaacttgcaattcatgattattttgtggtagaaaacatacattttattatttcaatcaaacaatacgccttattccatatcaccctctaaa-acccccgt |
411 |
Q |
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| T |
40351501 |
aaacttgcaattcatgattattttgtggtagaaaacatacattttattatttcaaccaaccaatacgctttattccataccaccctctaaattcccccgt |
40351600 |
T |
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| Q |
412 |
accattcattcgtgcgaaactcacattaacaatatacaatttcttttgaagaaatatttaattaatgcaattttgttcgagtcttcgatattgaga |
507 |
Q |
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| T |
40351601 |
actattcattcgtgcgaaactcacattaacaatatacaatttcttttgaagaaatatttaattaatgcaattttgttcgagtcttcgatactgaga |
40351696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 571 - 721
Target Start/End: Original strand, 40351760 - 40351902
Alignment:
| Q |
571 |
gaggggaagcgtcattggtaatttcaattttcatgatttgaatttaatgaaggtctcactnnnnnnnttatctaaaaattgagtagtctcttgaacaatt |
670 |
Q |
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| T |
40351760 |
gaggggaagggtcattggtaatttaaatttttacgatttgaatttaatgaaggtctcactaaaaaaattatcta--------gtagtctcttgaacaatt |
40351851 |
T |
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| Q |
671 |
cacattttgatggaacttattaatcacgagcagagaattttacatgcatat |
721 |
Q |
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| T |
40351852 |
cgcattttgatggaacttattaatcacgagcaaagaattttacatgcatat |
40351902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 124
Target Start/End: Original strand, 40355718 - 40355799
Alignment:
| Q |
43 |
ttagaaatgagtttggatgagaattgatttctaaaattaaactcatcatcaaatatatgtttaaaatgttgaatcacatttt |
124 |
Q |
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| T |
40355718 |
ttagaaatgagttttgattagaattaatttctaaaatcattatcaacatcaaacacatgtttaaaatgttgaatcacatttt |
40355799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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