View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_high_16 (Length: 274)
Name: NF2314_high_16
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 11359333 - 11359583
Alignment:
| Q |
1 |
tggtgtctaacagtgacacatataattacattcaatcaacgacgctcgtataagtaccaatgccgtgcttaaaaacatgcgcctacatattcatgattac |
100 |
Q |
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| T |
11359333 |
tggtgtctgacagtgacacatataattacattcaatcaacgacgctcgtataagtaccaatgccgtgcttaaaaacatgcgcctacatattcatgattac |
11359432 |
T |
|
| Q |
101 |
attaggttagatgatttagtattacctccccccatatatgaaatttgatacacttcacttgactgaattgtttaacaaggagacaagcacctgatccaat |
200 |
Q |
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| T |
11359433 |
attaggttagatgatttagtattacctccccccatatatgaaatttgatacacttcacttgactgaattgtttaagaaggagacaagcacttgatccaat |
11359532 |
T |
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| Q |
201 |
ttctcgatcaacaatactcccacgcttatagataatgatgttaacataagc |
251 |
Q |
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| T |
11359533 |
ttctcgatcaacaatactcccacgcttatagataatgatgttaacataagc |
11359583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 189
Target Start/End: Complemental strand, 30716428 - 30716377
Alignment:
| Q |
138 |
atgaaatttgatacacttcacttgactgaattgtttaacaaggagacaagca |
189 |
Q |
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| T |
30716428 |
atgaaatttcatacacttcacttgactgaattgattgagaaggagacaagca |
30716377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Complemental strand, 30709936 - 30709870
Alignment:
| Q |
138 |
atgaaatttgatacacttcacttgactgaattgtttaacaaggagacaagcacctgatccaatttct |
204 |
Q |
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| T |
30709936 |
atgaaatttgatacacttaacttgactgaattctttgagaaggagacaaacatttgatccagtttct |
30709870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 30724126 - 30724077
Alignment:
| Q |
141 |
aaatttgatacacttcacttgactgaattgtttaacaaggagacaagcac |
190 |
Q |
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||||| ||||||||||||||||||||||||||| | ||| ||| |||||| |
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| T |
30724126 |
aaattggatacacttcacttgactgaattgtttgagaagtagagaagcac |
30724077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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