View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_high_18 (Length: 242)
Name: NF2314_high_18
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 10249080 - 10249298
Alignment:
| Q |
19 |
tggttcactattgcagtatacattttctttatttctcttctctccccattttgtccttaatcaattaatgaatcatgtcaatgaaaatgatagtgaatcg |
118 |
Q |
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| T |
10249080 |
tggttcactattgcagtatacattttctttatttctcttctctccccattttgtccttaatcaatcaatgaatcatgtcaatgaaaatgatagtgaatcg |
10249179 |
T |
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| Q |
119 |
ggataaagtattgactttctataaacaaaaattaaataaagtttgaagtaatttatatttatattttgtgaagttgtttcaagttagtaagtgcaagttt |
218 |
Q |
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| T |
10249180 |
ggataaagtattgactttctataaacaaaaattaactaaagtttgaagtaatttatatttata-tttgtcaagttgtttcaagttattaagtgcaagttt |
10249278 |
T |
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| Q |
219 |
ttgaaacttatttcctctca |
238 |
Q |
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|||||||||||||||||||| |
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| T |
10249279 |
ttgaaacttatttcctctca |
10249298 |
T |
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