View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2314_high_19 (Length: 240)

Name: NF2314_high_19
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2314_high_19
NF2314_high_19
[»] chr3 (10 HSPs)
chr3 (1-223)||(9585227-9585449)
chr3 (14-223)||(763666-763875)
chr3 (45-223)||(783935-784116)
chr3 (46-95)||(1437864-1437913)
chr3 (51-96)||(9587327-9587372)
chr3 (53-96)||(43991827-43991870)
chr3 (42-96)||(14888745-14888799)
chr3 (60-95)||(2456106-2456141)
chr3 (54-89)||(2659297-2659332)
chr3 (53-95)||(771649-771691)
[»] chr2 (4 HSPs)
chr2 (59-96)||(33020180-33020217)
chr2 (53-96)||(33026521-33026564)
chr2 (53-96)||(33038018-33038061)
chr2 (62-95)||(7160913-7160946)
[»] chr7 (2 HSPs)
chr7 (37-95)||(27755555-27755613)
chr7 (55-95)||(24723213-24723253)
[»] chr1 (2 HSPs)
chr1 (46-95)||(51221341-51221390)
chr1 (52-96)||(51858467-51858511)
[»] scaffold0044 (1 HSPs)
scaffold0044 (54-96)||(89013-89055)
[»] scaffold1004 (1 HSPs)
scaffold1004 (51-96)||(2010-2055)
[»] scaffold0760 (1 HSPs)
scaffold0760 (51-96)||(4505-4550)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 9585227 - 9585449
Alignment:
Q  1 caatccatggattccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaatgttat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9585227 caatccatggattccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaatgttat 9585326  T
Q  101 gtgaagaactctgagaatcatatgccaacaaattaatggtacctctagcaaatactcctactgcactaatggagccatatggtaagtcttggatcctcct 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9585327 gtgaagaactctgagaatcatatgccaaccaattaatggtacctctagcaaatactcctactgcactagtggagccatatggtaagtcttggatcctcct 9585426  T
Q  201 ccaacaatccgtacccaaagtat 223  Q
    |||||||||||||||||||||||    
T  9585427 ccaacaatccgtacccaaagtat 9585449  T

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Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 223
Target Start/End: Original strand, 763666 - 763875
Alignment:
Q  14 ccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaatgttatgtgaagaactctg 113  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||       
T  763666 ccctcaaggtccaactatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaatgttgtgcgaagaact--- 763762  T
Q  114 agaatcatatgccaacaaattaatggtacctctagcaaatactcctactgcactaatggagcc---atatggtaagtcttggatcctcctccaacaatcc 210  Q
    |   |||| ||||||| |||||||||||||||||||||||||||||  | |||||||| ||||   ||||||||||||||| |||||||||||| |||||    
T  763763 actctcatgtgccaaccaattaatggtacctctagcaaatactcctggttcactaatgtagccataatatggtaagtcttgtatcctcctccaagaatcc 763862  T
Q  211 gtacccaaagtat 223  Q
    ||||||| |||||    
T  763863 gtacccagagtat 763875  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 783935 - 784116
Alignment:
Q  45 aggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaatgttatgtgaagaactctgagaatcatatgccaacaaattaatggtacct 144  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||  |||  |||||||    | |||||||| |||| |||||||||| ||     
T  783935 aggcttcaaaagattttgatacgactcattctccaaatcaagagaaacaatgacatgcaaagaactacttgcatcatatgtcaaccaattaatggtgcca 784034  T
Q  145 ctagcaaatactcctactgcactaatggagcca---tatggtaagtcttggatcctcctccaacaatccgtacccaaagtat 223  Q
    ||  |||| |||||      |  | ||| ||||   ||||| ||||||||||||||||||||| |||| |||||||||||||    
T  784035 ctcacaaagactccaggcataggactggggccagaatatgggaagtcttggatcctcctccaagaatcggtacccaaagtat 784116  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 1437913 - 1437864
Alignment:
Q  46 ggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaat 95  Q
    |||| ||||||||||||||||| ||||||||| |||||||||||||||||    
T  1437913 ggctgcaaaagcttttgatacgtctccttctctaaatcaagagaaacaat 1437864  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 96
Target Start/End: Original strand, 9587327 - 9587372
Alignment:
Q  51 caaaagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||    
T  9587327 caaaagattttgatacgactcgttctccaaatcaagagaaacaatg 9587372  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 43991870 - 43991827
Alignment:
Q  53 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  43991870 aaagcttttgataagactccgtctccaaatcaagagaaacaatg 43991827  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 96
Target Start/End: Original strand, 14888745 - 14888799
Alignment:
Q  42 attaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    |||||||| |||||| |||||||||||||  ||||||||||||||||||| ||||    
T  14888745 attaggctgcaaaagattttgatacgacttgttctccaaatcaagagaaaaaatg 14888799  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 95
Target Start/End: Complemental strand, 2456141 - 2456106
Alignment:
Q  60 ttgatacgactccttctccaaatcaagagaaacaat 95  Q
    |||||| |||||||||||||||||||||||||||||    
T  2456141 ttgatatgactccttctccaaatcaagagaaacaat 2456106  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 2659297 - 2659332
Alignment:
Q  54 aagcttttgatacgactccttctccaaatcaagaga 89  Q
    |||||||||||||||||||||||| |||||||||||    
T  2659297 aagcttttgatacgactccttctctaaatcaagaga 2659332  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 771649 - 771691
Alignment:
Q  53 aaagcttttgatacgactccttctccaaatcaagagaaacaat 95  Q
    |||| |||||||| ||||| |||||||||||||||||||||||    
T  771649 aaagattttgatatgactcattctccaaatcaagagaaacaat 771691  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 33020217 - 33020180
Alignment:
Q  59 tttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33020217 tttgatacgactccttctccaaatcaagagaaacaatg 33020180  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 33026564 - 33026521
Alignment:
Q  53 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  33026564 aaagcgtttgatacaactccttctccaaatcaagagaaacaatg 33026521  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 96
Target Start/End: Complemental strand, 33038061 - 33038018
Alignment:
Q  53 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  33038061 aaagcgtttgatacgattccttctccaaatcaagagaaacaatg 33038018  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 7160913 - 7160946
Alignment:
Q  62 gatacgactccttctccaaatcaagagaaacaat 95  Q
    |||| |||||||||||||||||||||||||||||    
T  7160913 gataagactccttctccaaatcaagagaaacaat 7160946  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 27755613 - 27755555
Alignment:
Q  37 tccaaattaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaat 95  Q
    ||||||||||||  |  |||||||| |||| ||||||||||||||||||||||||||||    
T  27755613 tccaaattaggcagcgcaagcttttcatacaactccttctccaaatcaagagaaacaat 27755555  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 95
Target Start/End: Complemental strand, 24723253 - 24723213
Alignment:
Q  55 agcttttgatacgactccttctccaaatcaagagaaacaat 95  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  24723253 agctcttgataagactccttctccaaatcaagagaaacaat 24723213  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 51221341 - 51221390
Alignment:
Q  46 ggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaat 95  Q
    |||| ||||||||||||||| || ||||||| ||||||||||||||||||    
T  51221341 ggctccaaaagcttttgataggattccttcttcaaatcaagagaaacaat 51221390  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 51858511 - 51858467
Alignment:
Q  52 aaaagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    ||||||| |||| || |||| ||||||||||||||||||||||||    
T  51858511 aaaagctcttgacacaactcattctccaaatcaagagaaacaatg 51858467  T

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Target: scaffold0044 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 96
Target Start/End: Complemental strand, 89055 - 89013
Alignment:
Q  54 aagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    |||||||| ||||||||| |||||||||||||| |||||||||    
T  89055 aagctttttatacgactcattctccaaatcaagtgaaacaatg 89013  T

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Target: scaffold1004 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 2055 - 2010
Alignment:
Q  51 caaaagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||||    
T  2055 caaaagcttttgatatgactctttcgtcaaatcaagagaaacaatg 2010  T

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Target: scaffold0760 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 4550 - 4505
Alignment:
Q  51 caaaagcttttgatacgactccttctccaaatcaagagaaacaatg 96  Q
    ||||||||||||||| ||||| |||  |||||||||||||||||||    
T  4550 caaaagcttttgatatgactctttcgtcaaatcaagagaaacaatg 4505  T

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