View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_high_2 (Length: 578)
Name: NF2314_high_2
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 197 - 561
Target Start/End: Complemental strand, 19391345 - 19390981
Alignment:
| Q |
197 |
tagaacctctccaatattggggcactgtgcttcttcacaaacagtgttaagcttcaactgagagatagattccttaatctgcgaaaatctttcaccttga |
296 |
Q |
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| T |
19391345 |
tagaacctctccaatattggggcactgtgcttcttcacaaacagtgttaagcttcaactgagagatagattccttaatctgcgaaaatctttcaccttga |
19391246 |
T |
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| Q |
297 |
ggagctttctgtctcaaccacgcaggcttcttgacattcgggtctcttcctgtgaatggacccaacccacctgggtaaggtccattcttgttctctgatt |
396 |
Q |
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| T |
19391245 |
ggagctttctgtctcaaccacgcaggcttcttcacattcgggtctcttcctgtgaatggacccaacccacctgggtaaggtccattcttgttctctgatt |
19391146 |
T |
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| Q |
397 |
ccatcagcttggacatcgccaacaccgacagaggttgttgttgcggtgagtaaacaacctcggaatgtgaaagtgatggatccttagcttggcatcgaag |
496 |
Q |
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| T |
19391145 |
ccatcagcttggacatcgccgacaccgacagaggttgttgttgcggtgagacaacaacctcggaatgtgaaagtgatggatcgttggcttggcatcgaag |
19391046 |
T |
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| Q |
497 |
tgtgaaagtaaaagaggaagattttgtcgttttatgaaatgggtttgaggagaaggagaaagaac |
561 |
Q |
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| T |
19391045 |
tgtgaaagtaaaagaggaaggttttgtggttttgtgaaatggatttgaggagaaggagaaagaac |
19390981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 19391531 - 19391450
Alignment:
| Q |
11 |
cacagaaaactaataacataaaagagaaagatacaagaaacttatatgaatcaaaatgaagcaactaactttgtcaaaattc |
92 |
Q |
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| T |
19391531 |
cacagaaaactaataacataaaagagaaagatacaagaaacttatatgaatcaaaacgaagcaactaactttgtcaaaattc |
19391450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 23700847 - 23700774
Alignment:
| Q |
16 |
aaaactaataacataaaagagaaagatacaagaaacttatatgaatcaaaatgaagcaactaactttgtcaaaa |
89 |
Q |
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|||||||||| ||| |||| ||||||||||||||||||| |||||||||||||||| | ||||||||||||||| |
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| T |
23700847 |
aaaactaatatcatgaaagggaaagatacaagaaacttacatgaatcaaaatgaagtagctaactttgtcaaaa |
23700774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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