View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2314_high_20 (Length: 238)

Name: NF2314_high_20
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2314_high_20
NF2314_high_20
[»] chr5 (7 HSPs)
chr5 (19-211)||(29144269-29144456)
chr5 (74-149)||(24196359-24196433)
chr5 (74-167)||(7313194-7313286)
chr5 (74-160)||(3849746-3849831)
chr5 (72-187)||(19366724-19366838)
chr5 (102-160)||(22731916-22731974)
chr5 (74-122)||(33382285-33382332)
[»] chr2 (6 HSPs)
chr2 (74-163)||(12799001-12799089)
chr2 (74-167)||(2654151-2654242)
chr2 (74-160)||(23740025-23740109)
chr2 (83-138)||(17932263-17932318)
chr2 (83-122)||(26852971-26853010)
chr2 (74-160)||(45134476-45134559)
[»] chr6 (4 HSPs)
chr6 (83-160)||(34629003-34629080)
chr6 (74-160)||(21608149-21608234)
chr6 (83-143)||(2865114-2865174)
chr6 (83-143)||(2884304-2884364)
[»] chr3 (10 HSPs)
chr3 (72-160)||(23160612-23160698)
chr3 (74-142)||(42678301-42678368)
chr3 (74-160)||(17947398-17947483)
chr3 (74-160)||(31064516-31064601)
chr3 (82-160)||(38576358-38576436)
chr3 (74-161)||(30917031-30917117)
chr3 (97-142)||(31316054-31316099)
chr3 (83-163)||(41898222-41898300)
chr3 (129-177)||(32497759-32497807)
chr3 (74-151)||(46543482-46543562)
[»] chr4 (7 HSPs)
chr4 (72-151)||(42915773-42915851)
chr4 (72-173)||(20922724-20922825)
chr4 (82-150)||(17405772-17405840)
chr4 (74-160)||(47750502-47750585)
chr4 (82-143)||(2905543-2905604)
chr4 (101-169)||(42498931-42498999)
chr4 (74-122)||(45983220-45983267)
[»] scaffold0368 (1 HSPs)
scaffold0368 (86-174)||(10499-10587)
[»] chr8 (7 HSPs)
chr8 (84-166)||(42644547-42644626)
chr8 (82-160)||(14050100-14050178)
chr8 (74-160)||(15021311-15021396)
chr8 (85-167)||(6599550-6599632)
chr8 (85-167)||(6675003-6675085)
chr8 (85-176)||(31330170-31330260)
chr8 (83-151)||(40891940-40892008)
[»] chr1 (6 HSPs)
chr1 (86-174)||(42830443-42830531)
chr1 (72-160)||(52012422-52012508)
chr1 (83-160)||(4612481-4612558)
chr1 (74-160)||(20997734-20997819)
chr1 (83-157)||(31647676-31647749)
chr1 (83-143)||(42888015-42888075)
[»] chr7 (2 HSPs)
chr7 (83-169)||(41999259-41999345)
chr7 (82-180)||(43496247-43496345)
[»] scaffold0735 (1 HSPs)
scaffold0735 (83-143)||(968-1028)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 29144456 - 29144269
Alignment:
Q  19 atcggtgcctcgagatactagttaagaaattataaaagaaaatannnnnnnnnggaaattgtgatattttactttctgaaatttgaaaaagtgttgcttt 118  Q
    ||||||| | ||||| |||||||||||||||||||||| |||||         |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  29144456 atcggtgtcccgagacactagttaagaaattataaaaggaaatattttttt--ggaaattgtg-tattttattttctgaaatttgaaaaagtgttgcttt 29144360  T
Q  119 taatactgactttgttttttctttccatttttagttgcttaattaatgctccagagacaccgattaacatcatcctaaaaacaatcacaacaa 211  Q
    |||| |||||||| |||||||||| ||||||||||||||||| || | | ||||||  || ||||||||||||||||||||||||||||||||    
T  29144359 taatgctgactttattttttcttttcatttttagttgcttaactagtaccccagag--actgattaacatcatcctaaaaacaatcacaacaa 29144269  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 74 - 149
Target Start/End: Complemental strand, 24196433 - 24196359
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttt 149  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  24196433 aaattgtg-tattttactttttgaaatttgaaaaagtgttgcttttaatgttgactttgttttttctttccatttt 24196359  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 7313286 - 7313194
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgc 167  Q
    |||||||| ||| ||||||| ||||| |||||||||||||  |||||||| | | ||| | ||||||| | |||||||||||||||||||||||    
T  7313286 aaattgtg-tatattactttttgaaacttgaaaaagtgttatttttaatattaattttatcttttcttactatttttagttgcttaattaatgc 7313194  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 3849746 - 3849831
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| ||||||||||| | ||| | |||||| |||| ||||||||  ||| |||||||||||||||||||||||  |||||||    
T  3849746 aaattgtg-tattttactttttaaaactcgaaaaaatgttacttttaatgttgattttgttttttctttccatttttatctgcttaa 3849831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 187
Target Start/End: Complemental strand, 19366838 - 19366724
Alignment:
Q  72 ggaaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgctcca 171  Q
    |||||||||| |||| |||||| ||||| ||||||||| |||  ||||||| |  | |||| |||||||||| | ||||||||  ||||| | ||  |||    
T  19366838 ggaaattgtg-tattctactttttgaaagttgaaaaagagttttttttaatgcaaaatttgatttttctttctacttttagtttattaatcagtggccca 19366740  T
Q  172 gagacaccgattaaca 187  Q
    ||||||||||||||||    
T  19366739 gagacaccgattaaca 19366724  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 22731974 - 22731916
Alignment:
Q  102 tgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    ||||||| ||||||||||||| || | || ||||||||||| ||||||||| |||||||    
T  22731974 tgaaaaaatgttgcttttaatgctaaattcgttttttctttacatttttagctgcttaa 22731916  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 33382332 - 33382285
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaat 122  Q
    |||||||| ||||||||||| ||||| || |||||||||||||||||||    
T  33382332 aaattgtg-tattttactttttgaaacttaaaaaagtgttgcttttaat 33382285  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 12799001 - 12799089
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaatta 163  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||||||||||||| |||||||||||||||||    
T  12799001 aaattgtg-tattttactttttgaaatttgaaaaagtgctgcttttaataatgattttgttttttctttccacttttagttgcttaatta 12799089  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 2654242 - 2654151
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgc 167  Q
    |||||||| |||||||  || ||||| |||||||||| |||||||||||   || |||||||||||||||||||||||| ||||||| ||||||    
T  2654242 aaattgtg-tattttatattttgaaacttgaaaaagttttgcttttaatga-gattttgttttttctttccatttttaggtgcttaactaatgc 2654151  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 23740109 - 23740025
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| ||||||||||| | ||| ||||||||||||||||||||||  ||| |||| |||||| || |||||||||||| ||||    
T  23740109 aaattgtg-tattttactttttaaaacttgaaaaagtgttgcttttaatgatgattttg-tttttccttacatttttagttgtttaa 23740025  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 138
Target Start/End: Original strand, 17932263 - 17932318
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgtttttt 138  Q
    ||||||||||| || || |||||||||| |||||||||||| ||||||| ||||||    
T  17932263 tattttactttttgtaacttgaaaaagtattgcttttaatattgactttatttttt 17932318  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 122
Target Start/End: Complemental strand, 26853010 - 26852971
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaat 122  Q
    ||||||||||| |||||||| |||||||||||||||||||    
T  26853010 tattttactttttgaaatttcaaaaagtgttgcttttaat 26852971  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 45134476 - 45134559
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| ||||||||||| | ||| ||||||||||||| |||||||| || |||||| | |||||||||||||||| ||| ||||    
T  45134476 aaattgtg-tattttactttttaaaacttgaaaaagtgtt-cttttaatgctaactttg-tctttctttccatttttaattgtttaa 45134559  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 34629080 - 34629003
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    ||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||| |||| |||||||    
T  34629080 tattttactttttgaaatttgaaaaagtgttgcttttaatgtttactttgttttttctttccattcttagctgcttaa 34629003  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 21608234 - 21608149
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| ||||||||||| | |||||||||||| | ||| || |||| ||| |||| |||||||||| ||||||||| |||||||    
T  21608234 aaattgtg-tattttactttttaaaatttgaaaaaatattgtttgtaattctgtctttattttttcttttcatttttagctgcttaa 21608149  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 2865114 - 2865174
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttc 143  Q
    ||||||||||| ||||| |||||||| ||||| |||||||  |||||||| ||||||||||    
T  2865114 tattttactttttgaaacttgaaaaaatgttgattttaatgttgactttgctttttctttc 2865174  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 2884304 - 2884364
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttc 143  Q
    ||||||||||| ||||| ||||||||  |||| |||||||  |||||||| ||||||||||    
T  2884304 tattttactttttgaaacttgaaaaaaagttgattttaatgttgactttgctttttctttc 2884364  T

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Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 23160698 - 23160612
Alignment:
Q  72 ggaaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    ||||||||| |||||||||||| ||||| |||||||||||||| |||||||  ||| |||||||||||||| |||||||||||||||||    
T  23160698 ggaaattgt-atattttactttttgaaacttgaaaaagtgttgtttttaat-ttgattttgttttttcttttcatttttagttgcttaa 23160612  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 42678301 - 42678368
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttcttt 142  Q
    |||||||| ||||||||||| | ||||||||||||||||||||||||||  ||||||||||||||||||    
T  42678301 aaattgtg-tattttactttttaaaatttgaaaaagtgttgcttttaatgttgactttgttttttcttt 42678368  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 17947398 - 17947483
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| ||||||| | | ||||| ||||||||||| |||||||||| |||| ||| |||||||||||||||||||| |||||||    
T  17947398 aaattgtg-tattttaatgtttgaaacttgaaaaagtgatgcttttaatgctgattttattttttctttccatttttagctgcttaa 17947483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 31064601 - 31064516
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| ||||||||||| ||||| ||||||| |||||| ||||||| || ||||||| ||||||||||||||||  ||||||||    
T  31064601 aaattgtg-tattttactttttgaaacttgaaaacgtgttgtttttaatgctaactttgtattttctttccatttttgattgcttaa 31064516  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 38576358 - 38576436
Alignment:
Q  82 atattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||||||| |||||||||||||| ||||| |||||||  ||||||| ||||||||||| | |||||  |||||||    
T  38576358 atattttactttttgaaatttgaaaaaatgttgtttttaatgttgactttattttttctttctacttttaactgcttaa 38576436  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 30917117 - 30917031
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaat 161  Q
    |||||||| ||||||||||| |||||||||||||||| ||  |||||||  | | |||||  |||||||| ||||||||||| |||||    
T  30917117 aaattgtg-tattttactttttgaaatttgaaaaagtattatttttaatgttaattttgtcatttctttctatttttagttgtttaat 30917031  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 31316054 - 31316099
Alignment:
Q  97 aaatttgaaaaagtgttgcttttaatactgactttgttttttcttt 142  Q
    |||||||||||||||||| ||||||| ||| |||| ||||||||||    
T  31316054 aaatttgaaaaagtgttgtttttaatgctgtctttattttttcttt 31316099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 41898222 - 41898300
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaatta 163  Q
    ||||||||||| ||||| || ||||||||||  |||||||  | | ||||| |||||||  ||||||||||||||||||||    
T  41898222 tattttactttttgaaacttaaaaaagtgtt--ttttaatgttaattttgtcttttcttctcatttttagttgcttaatta 41898300  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 32497807 - 32497759
Alignment:
Q  129 tttgttttttctttccatttttagttgcttaattaatgctccagagaca 177  Q
    ||||| |||||||||||||||||||| |||||  ||| |||||||||||    
T  32497807 tttgtattttctttccatttttagtttcttaaccaatactccagagaca 32497759  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 46543562 - 46543482
Alignment:
Q  74 aaattgtgatattttactttctgaaatt----tgaaaaagtgttgcttttaatactgactttgttttttctttccattttta 151  Q
    |||||||| ||||||||||| |||||||    ||||||| |||||||| ||||  ||||||| |||||||||||| ||||||    
T  46543562 aaattgtg-tattttactttttgaaattaacttgaaaaaatgttgcttgtaatgttgactttattttttctttcccttttta 46543482  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 42915773 - 42915851
Alignment:
Q  72 ggaaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccattttta 151  Q
    |||||||||| ||||||||||| | ||| || ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  42915773 ggaaattgtg-tattttactttttaaaacttaaaaaagtgttgcttttaatgctgactttgttttttctttctattttta 42915851  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 20922724 - 20922825
Alignment:
Q  72 ggaaattgtgatattttactttctgaaatttgaaaaagtgttgctttt-aatactgactttgttttttctttccatttttagttgcttaattaatgctcc 170  Q
    ||||||||| ||||||||||||  |||| |||||||||||||| |||| ||| |||||||| |||||||||||||||||||| | ||||| || ||| ||    
T  20922724 ggaaattgt-atattttacttttcgaaacttgaaaaagtgttgttttttaatgctgactttattttttctttccatttttagctacttaactagtgcacc 20922822  T
Q  171 aga 173  Q
    |||    
T  20922823 aga 20922825  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 150
Target Start/End: Complemental strand, 17405840 - 17405772
Alignment:
Q  82 atattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccattttt 150  Q
    |||||||| ||| |||||||||||||||||||||||| ||| |||| ||| |||||||||| |||||||    
T  17405840 atattttattttttgaaatttgaaaaagtgttgctttcaatgctgattttattttttcttttcattttt 17405772  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 47750502 - 47750585
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| ||||||||||| ||||| |||||||||||||  |||||||  |||||||| ||||||||||||||||||  |||||||    
T  47750502 aaattgtg-tattttactttttgaaacttgaaaaagtgtt--ttttaatgttgactttgatttttctttccatttttaactgcttaa 47750585  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 2905543 - 2905604
Alignment:
Q  82 atattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttc 143  Q
    |||||||||||| ||||||||||||||||  | || ||||| ||||||||||||||||||||    
T  2905543 atattttactttttgaaatttgaaaaagttctactcttaatgctgactttgttttttctttc 2905604  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 42498931 - 42498999
Alignment:
Q  101 ttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgctc 169  Q
    |||||||| ||||| |||||||| | |||||||  |||||||||||||||| |||||||| || |||||    
T  42498931 ttgaaaaaatgttgtttttaatattaactttgtcatttctttccatttttaattgcttaactagtgctc 42498999  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 45983220 - 45983267
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaat 122  Q
    |||||||| ||||||||||| |||||||||||||||||||| |||||||    
T  45983220 aaattgtg-tattttactttttgaaatttgaaaaagtgttgtttttaat 45983267  T

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Target: scaffold0368 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 10587 - 10499
Alignment:
Q  86 tttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgctccagag 174  Q
    |||||||| ||||| | ||||||||||||||||||||  ||| ||| ||||||||||  |||||||  |||||||||||||| ||||||    
T  10587 tttactttttgaaactcgaaaaagtgttgcttttaatgttgattttattttttctttttatttttatctgcttaattaatgccccagag 10499  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 42644626 - 42644547
Alignment:
Q  84 attttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatg 166  Q
    |||||| ||| ||||||||||||||| |||||||||    |||||||||||||||||||| |||||||| ||||||| |||||    
T  42644626 attttattttttgaaatttgaaaaagcgttgcttttg---ctgactttgttttttctttcaatttttagctgcttaactaatg 42644547  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 160
Target Start/End: Complemental strand, 14050178 - 14050100
Alignment:
Q  82 atattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||||||| |||||||||||||||||||||||||  |  | |||||||  ||||||| |||||||||||| ||||    
T  14050178 atattttactttttgaaatttgaaaaagtgttgcttttggtgtttactttgtcgtttcttttcatttttagttgtttaa 14050100  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 160
Target Start/End: Complemental strand, 15021396 - 15021311
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| |||||||| || ||||| |||||||| ||||||| || || || |||||||||||||||| |||||||||||| ||||    
T  15021396 aaattgtg-tattttacattttgaaacttgaaaaaatgttgctctttatgcttactttgttttttcttttcatttttagttgtttaa 15021311  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 6599550 - 6599632
Alignment:
Q  85 ttttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgc 167  Q
    ||||||||| ||||| |||||||| |||||||||||||  | |||||||  |||||||  ||||||| |||||||| ||||||    
T  6599550 ttttactttttgaaacttgaaaaaatgttgcttttaatgttaactttgtcctttctttatatttttatttgcttaactaatgc 6599632  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 6675003 - 6675085
Alignment:
Q  85 ttttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgc 167  Q
    ||||||||| ||||| |||||||| |||||||||||||  | |||||||  |||||||  ||||||| |||||||| ||||||    
T  6675003 ttttactttttgaaacttgaaaaaatgttgcttttaatgttaactttgtcctttctttatatttttatttgcttaactaatgc 6675085  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 176
Target Start/End: Original strand, 31330170 - 31330260
Alignment:
Q  85 ttttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgctccagagac 176  Q
    ||||||||| ||||| || ||| ||||||||||||||| ||||||||  ||||||||| ||||||||  | ||||| ||||||  |||||||    
T  31330170 ttttactttttgaaacttaaaatagtgttgcttttaatgctgacttt-atttttcttttcatttttaactacttaactaatgcctcagagac 31330260  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 40891940 - 40892008
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccattttta 151  Q
    ||||||| ||| ||||| ||||||| |  ||| |||||||  ||||||| |||||||||||||||||||    
T  40891940 tattttattttttgaaacttgaaaatgatttgtttttaatgttgactttattttttctttccattttta 40892008  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 174
Target Start/End: Complemental strand, 42830531 - 42830443
Alignment:
Q  86 tttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgctccagag 174  Q
    |||||||| ||||| | ||||||||||||||||||||  ||| ||| ||||||||||  |||||||  |||||||||||||| ||||||    
T  42830531 tttactttttgaaactcgaaaaagtgttgcttttaatgttgattttattttttctttttatttttatctgcttaattaatgccccagag 42830443  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 52012508 - 52012422
Alignment:
Q  72 ggaaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||||| ||||||||||| ||||| ||||||||||| || ||||||| |||| | |||||||||||| ||||||||| |||||||    
T  52012508 ggaaattgtg-tattttactttttgaaacttgaaaaagtgatggttttaatgctgattatgttttttcttt-catttttagctgcttaa 52012422  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 4612481 - 4612558
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    ||||||||||| ||||| |||||||||||||  ||||||| |||| ||| ||||||||||| |||||||  |||||||    
T  4612481 tattttactttttgaaacttgaaaaagtgttctttttaatgctgattttattttttctttctatttttaaatgcttaa 4612558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 20997734 - 20997819
Alignment:
Q  74 aaattgtgatattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaa 160  Q
    |||||||| ||||||||||| ||||| | |||||| || ||||||||||  ||| ||| |||||||||||||||||||  |||||||    
T  20997734 aaattgtg-tattttactttttgaaactcgaaaaaatgctgcttttaatgttgattttattttttctttccatttttatctgcttaa 20997819  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 31647676 - 31647749
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgct 157  Q
    ||||||||||| ||||| ||| || ||| ||| |||||||  |||||||| ||||||||||||||||||| ||||    
T  31647676 tattttactttttgaaacttgtaagagtattgtttttaatgttgactttg-tttttctttccatttttagctgct 31647749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 42888015 - 42888075
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttc 143  Q
    ||||||||||| | ||| |||||||  |||||||||||||  ||| |||||||||||||||    
T  42888015 tattttactttttcaaacttgaaaagatgttgcttttaatgttgattttgttttttctttc 42888075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 41999345 - 41999259
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgctc 169  Q
    ||||||||||  |||| ||||||||||||||| |||||||  | ||||| |  ||||||| |||||||||||| |||| || |||||    
T  41999345 tattttacttcttgaactttgaaaaagtgttgattttaatgttaactttttcatttcttttcatttttagttgtttaactactgctc 41999259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 43496247 - 43496345
Alignment:
Q  82 atattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttccatttttagttgcttaattaatgctccagagacaccg 180  Q
    |||||||||||| ||||| ||  |||||||||| ||||||| || || ||| |||| |||| ||||||||  ||||||| || |||||| | |||||||    
T  43496247 atattttactttttgaaacttataaaagtgttggttttaatgctaacgttgattttccttttcatttttaactgcttaactagtgctccggcgacaccg 43496345  T

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Target: scaffold0735 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 968 - 1028
Alignment:
Q  83 tattttactttctgaaatttgaaaaagtgttgcttttaatactgactttgttttttctttc 143  Q
    ||||||||||| | ||| |||||||  |||||||||||||  ||| |||||||||||||||    
T  968 tattttactttttcaaacttgaaaagatgttgcttttaatgttgattttgttttttctttc 1028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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