View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_high_24 (Length: 218)
Name: NF2314_high_24
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 806949 - 806763
Alignment:
| Q |
16 |
atgaataattatggtggtgaagttattactgaacatgaaaatcacatagaaggaactgagtggggtaatcagaaactattggctttgtaaataacaatga |
115 |
Q |
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| T |
806949 |
atgaataattgtggtggtgaagttattactgaacatgaaaatcacatagaaggaactgagtggggtaatcagaaactattggctttgtaaataacaatga |
806850 |
T |
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| Q |
116 |
caatcttaaaccaaatactcagcatgagattgtaaacaatagaaaagaacacttaaacatgggggctcagctcatgcttgtaaatag |
202 |
Q |
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| T |
806849 |
caatcttaaaccaaatactcagcatgagattgtaaataatagaaaagaacacttaaacatgggggctcagctcatgcttgtaaatag |
806763 |
T |
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Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 34728917 - 34728718
Alignment:
| Q |
16 |
atgaataattatggtggtgaagttattactgaacatgaaaatcacatagaaggaactgagtggggtaatca-------------gaaactattggctttg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||| |
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| T |
34728917 |
atgaataattatggtggtgaagttattactgaacatgaaaatcacatagaaggaactgagtggggtaatcatgttatgccatcagaaactactggttttg |
34728818 |
T |
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| Q |
103 |
taaataacaatgacaatcttaaaccaaatactcagcatgagattgtaaacaatagaaaagaacacttaaacatgggggctcagctcatgcttgtaaatag |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34728817 |
taaataacaatgacaatcttaaaccaaatactcagcatgagattgtaaataatagaaaagagcacttaaacatgggggctcagctcatgcttgtaaatag |
34728718 |
T |
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