View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_high_5 (Length: 500)
Name: NF2314_high_5
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 45123201 - 45122828
Alignment:
| Q |
20 |
tatcctcctttcaaaat---caaaaccaggtaggtctcttttccctctcat---ttcattctatcatcataatcaaatcaataacagtgtttaaat---- |
109 |
Q |
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| T |
45123201 |
tatcctcctttcaaaataatcaaaaccaggtaggtctcttttccctctcataatttcattctatcatcataatcaaatcaataacagtgtttaaataaat |
45123102 |
T |
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| Q |
110 |
gcagggtaaagagcattctgattctgagggatcatcacctctcactgttacttcccgggtatgtatgtatg----tatgctactttctatttattttcaa |
205 |
Q |
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| T |
45123101 |
gcagggtaaagagcattctgattctgagggatcatcacctctcactgttacttcccgggtatgtatgtatgtatgtatgctactttctatttattttcaa |
45123002 |
T |
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| Q |
206 |
ttttcttcattcattcaattcaaaactacnnnnnnnnnnnnnnatgatttcaggttttgtgtatgttgggagacatcactgctggacctgctattatgtt |
305 |
Q |
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| T |
45123001 |
ttttcttcattcattcaattcaaaact--------ttttttttatgatttcaggttttgtgtatgttgggagacatcactgctggacctgctattatgtt |
45122910 |
T |
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| Q |
306 |
cacacaatggcttcaatcagttcgtaaacgaacttccaatcatcgttcctctggatttcctcgctcttcttccactctcccc |
387 |
Q |
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| T |
45122909 |
cacacaatggcttcaatcagttcgtaaacgaacttccagtcatcgctcctctggatttcctcgctcttcttccactctcccc |
45122828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 40259109 - 40259044
Alignment:
| Q |
303 |
gttcacacaatggcttcaatcagttcgtaaacgaacttccaatcatcgttcctctggatttcctcg |
368 |
Q |
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| T |
40259109 |
gttcacacaatggcttcaattggttcgtaaacgcacttcaaagtatcgatcctctggcttccctcg |
40259044 |
T |
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