View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_low_1 (Length: 757)
Name: NF2314_low_1
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 712; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 1 - 740
Target Start/End: Original strand, 19911357 - 19912096
Alignment:
| Q |
1 |
ttgaagtcttcttcatcactcaaagtataccttgatccttccaatcccatctccctatcagtctcctccagcaagtccattagtgacatcatcattggag |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911357 |
ttgatgtcttcttcatcactcaaagtataccttgatccttccaatcccatctccctatcagtctcctccagcaagtccattagtgacatcatcattggag |
19911456 |
T |
|
| Q |
101 |
ccccttctgaagtctccacctctgttgctgcagcggcttctgccgcttcctgcgctgccactgcctcccttgctgaaagtgccctcactgtcgctggttt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911457 |
ccccttctgaagtctccacctctgttgctgcagcagcttctgccgcttcctgcgctgccactgcctcccttgctgaaagtgccctcactgtcgctggttt |
19911556 |
T |
|
| Q |
201 |
cttgttgtcatcatcgtcgggataatcctcatcgaagttgtctctaaaagtcactacacgtcctcggtgaaacggctctgatgacacattggtggaattt |
300 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911557 |
cttgttgtcatcatcgtcgggatcatcctcatcgaagttgtctctaaaagtcactacacgtcctcggtgaaacggctctgatgacacattggtggaattt |
19911656 |
T |
|
| Q |
301 |
cttcgtgagagttgcggccggagatttcctccgccagaggagttttctggtgattcgaccgagagacgtgtggagatgcggcgagtgaactgtggtctag |
400 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911657 |
cttcgtgagagttgcgaccggagatttcctccgccagaggagttttctggtgattcgaccgagagacgtgtggagatgcggcgagtgaactgtggtctag |
19911756 |
T |
|
| Q |
401 |
tggccggaggattggactcctccgatgggtcaaggtcgtccccttggtgagtcatggattgggtggttgacatgtctgagtcatcgtggtgagtttggat |
500 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911757 |
tggccggaggattggactcctccgatgagtcagggtcgtccccttggtgagtcatggattgggtggttgacatgtctgagtcatcgtggtgagtttggat |
19911856 |
T |
|
| Q |
501 |
tcggactgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatatctgaagttggaatatgaatcgttgatgtccaagta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19911857 |
tcggactgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatatctgaagttggaatatgaatcgttgatgtccaagca |
19911956 |
T |
|
| Q |
601 |
gagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaaactgtgagctaactatttgagaaccatagt |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19911957 |
gagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaaatgaaactgtgagctaactatttgagaaccatagt |
19912056 |
T |
|
| Q |
701 |
ctttcctcgacaatgtaagaggacaatacacatatgtcat |
740 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
19912057 |
ctttcctcgacaatgtaagaggacaatacacatatgtcat |
19912096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 466 - 670
Target Start/End: Complemental strand, 29404987 - 29404786
Alignment:
| Q |
466 |
gttgacatgtctgagtcatcgtggtgagtttggattcggactgagttgcgacgaccgaattgagaaaaacttctactattaggattttggataggaatat |
565 |
Q |
| |
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||||||||||||||||| || |||||||||| ||| ||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| || | |
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| T |
29404987 |
gttgacatgtctgagtc---gtaatgagtttggactcgaactgagttgcgacgaccgaattgtgaaaagcttctgctgtttggattttggatagggatgt |
29404891 |
T |
|
| Q |
566 |
ctgaagttggaatatgaatcgttgatgtccaagtagagccagtgcgtttgagtcgaatcttgtccttgaatgctttccaagatcttccaaatcagtgaaa |
665 |
Q |
| |
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| || |||||||| |||| | ||||||||||| |||||||| || || || |||| |||||| || || |||||||||||||||||| |||| ||||| |
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| T |
29404890 |
cggatgttggaatgggaattgatgatgtccaagcagagccagcacgctttagccgaagcttgtctttaaaggctttccaagatcttccatatcaatgaaa |
29404791 |
T |
|
| Q |
666 |
atgaa |
670 |
Q |
| |
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||||| |
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| T |
29404790 |
atgaa |
29404786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 66
Target Start/End: Complemental strand, 29405431 - 29405372
Alignment:
| Q |
7 |
tcttcttcatcactcaaagtataccttgatccttccaatcccatctccctatcagtctcc |
66 |
Q |
| |
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||||| |||||||| || |||||||||| |||||||| |||||||| |||||||||||| |
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| T |
29405431 |
tcttcctcatcacttaatatataccttgacccttccaaccccatctctctatcagtctcc |
29405372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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