View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2314_low_10 (Length: 396)
Name: NF2314_low_10
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_10 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
| [»] scaffold0289 (3 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 15 - 389
Target Start/End: Original strand, 14522169 - 14522543
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14522169 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
14522268 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14522269 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
14522368 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14522369 |
gcttgaagtgcaacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
14522468 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14522469 |
gttttatgactatggaagtttccacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
14522543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 15011567 - 15011193
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
15011567 |
agtttcttcacagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctg |
15011468 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| |||| |||||| ||||||||| |
|
|
| T |
15011467 |
tggcttcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtacaggcttgtattcttttgt |
15011368 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15011367 |
gcttgaagttcgacacaaaaggtatgagatcccataaacaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgtta |
15011268 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| |||||| ||| || || | ||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
15011267 |
gtcttatgataatgaaatttgccaccagatgttgagcaaggctctaggccagagacattaccacataagcctttg |
15011193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 15002674 - 15002300
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| ||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
15002674 |
agtttcttcacagctacaacttgacctgtaggcagttctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctg |
15002575 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| | || |||||| ||||||||| |
|
|
| T |
15002574 |
tggcttcgattatgttctcgtacaccatttttccatcaaagctccatatttcaaatagattttcaattttcaattcttgtgcaggcttgtattcttttgt |
15002475 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15002474 |
gcttgaagttcgacaaaaaaggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgtta |
15002375 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| ||||||||||| ||| | | ||| |||||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
15002374 |
gtattatgactatgaaaggtgccacccgatgttgagcaaggctctaggccagaaacattaccacacaagcctttg |
15002300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 15037586 - 15037213
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||| | |
|
|
| T |
15037586 |
agtttcttcacagctacaacttgacctgtgggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttcag |
15037487 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| | | |||||| ||||||||| |
|
|
| T |
15037486 |
tggcttcgataatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgctggcttgtgttcttttgt |
15037387 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| |||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15037386 |
gcttgaagttcgac-aaagaggtatgagatcccataaacaatcaatgctaacaatagagggccgagagtgagggatagaactagcaccaaaattttgtta |
15037288 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| ||||||||||| ||| | | ||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
15037287 |
gtattatgactatgaaaggtgccacccgatgttgagcaaggctctaggccagagacattaccacataagcctttg |
15037213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 15 - 389
Target Start/End: Original strand, 14532290 - 14532664
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
14532290 |
agtttcttcacagcaacaacttgacctgtaggcaactctgctttgtaaacacttccatgccctccaaccccaatgagatgcttgttgtcaaaatcttctg |
14532389 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | || |||||||||||||| |
|
|
| T |
14532390 |
tggcttcgataatggtctcgtacaccatttttccatcaaagctccatattgcaaatagattttcagtttgaaattcttctgcgtggttgtcttcttttgt |
14532489 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| ||| |||| ||||| ||||||| || ||||||||||||| |||||||||||||||||| ||| || |
|
|
| T |
14532490 |
gcttgaagtttgacaaaaaaggtatgagatcccgtaagcaaaaaatgccaacaatagagtacctagagtgaggggtaaaactagcaccaaaatattgcta |
14532589 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| ||||||||||| ||||| | |||||||||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
14532590 |
gtcttatgactatgaaagttgccacctgatgttgagcaacacactaggccagagacattaccacacaagcctttg |
14532664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 15 - 385
Target Start/End: Complemental strand, 15017682 - 15017312
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||| | |
|
|
| T |
15017682 |
agtttcttcacagctacaacttgacctgaaggcaactctgctttgtaaacacttgcatgtcctccaaccccaatgagatgtttgttgtcaaaatcttccg |
15017583 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||| | || |||||| ||||| ||| |
|
|
| T |
15017582 |
tggcttcgattatgttctcatacaccattttgccatcaaagctccatatttcaaatagattttcaatttgaaattcttgtgcaggcttgtattcttctgt |
15017483 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||| ||||||||||| || ||| ||||||||||| |||| |||||||||| |||||||||| |
|
|
| T |
15017482 |
gcttgaagttcgacaaaaaaagtatgagatcccataaacaattaatgctaacagtagaggacctagagtgagtgatagaactagcacccaaattttgttt |
15017383 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcc |
385 |
Q |
| |
|
|| |||||| |||| || || | ||| ||| |||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
15017382 |
gtcttatgattatgaaacttgccaccagatattgagcaaggctctaggccagagatattaccacacaagcc |
15017312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 15033019 - 15032651
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| | ||||| ||||| |||||||||||| | |
|
|
| T |
15033019 |
agtttcttcacagctacaacttgacctgtgggcaactctgctttgtaaacacttccatgtcctccaaccccaaggagatgcttgtcgtcaaaatcttcag |
15032920 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| |||||||||||||||||| ||| ||||||||| |||||||||||| | || |||||| |||||||| |
|
|
| T |
15032919 |
tggcttcgattatgttctcgtacaccattttgccatcaaagctccatatttcaaacagattttcaatttgaaattcttgtgcaggcttgtattcttttgc |
15032820 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||| | ||||| || ||||||||||| |||| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15032819 |
gcttgaaattcgacacaaaaggtatgagatc------acaattaatgctaacagtagagggcctagagtgagggatagaactagcaccaaaattttgtta |
15032726 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| |||||| |||| || || | ||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
15032725 |
gtcttatgattatgaaatttgccaccagatgttgagcaaggctctaggccagagacattaccacataagcctttg |
15032651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 14504549 - 14504241
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
14504549 |
agtttcttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccgatgagatgtttgttgtcaaactcttctg |
14504450 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| || |||||||| || |||| ||||||||| |
|
|
| T |
14504449 |
tggcttctacaatattttcatacaccatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttgt |
14504350 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
| | ||||| ||| | | | || |||||||||||| |||||||||||||||| ||| ||||||||||| || ||||| || |||||| |||||||| |
|
|
| T |
14504349 |
gttcgaagttcgaaatagataataggagatcccataaccaaataatgctaacaaaaaaatgcctagagtgatgggtaaaattaccaccaattttttgtta |
14504250 |
T |
|
| Q |
315 |
gttttatga |
323 |
Q |
| |
|
|| |||||| |
|
|
| T |
14504249 |
gtcttatga |
14504241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 15 - 323
Target Start/End: Complemental strand, 14468370 - 14468062
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
14468370 |
agtttcttcacagctacaacttgacctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccaatgagatgcttgttgtcaaactcttctg |
14468271 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
||||||| | || || |||||||| |||||||||||||| |||||||||| ||||||||||||||| || |||||||| || |||| ||||||| | |
|
|
| T |
14468270 |
tggcttcaacaatgttttcatacacaatttttccatcaaaactccatattgaaaatagattttcagtgtgtgattcttctgcaaccttggattcttttct |
14468171 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
| | ||||| ||| | | | || |||||||||||| |||||||||||||||| ||| ||||||||||| || ||||| || |||||| |||||||| |
|
|
| T |
14468170 |
gttcgaagttcgaaatagataataggagatcccataaccaaataatgctaacaaaaaaatgcctagagtgatgggtaaaattaccaccaattttttgtta |
14468071 |
T |
|
| Q |
315 |
gttttatga |
323 |
Q |
| |
|
|| |||||| |
|
|
| T |
14468070 |
gtcttatga |
14468062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 14483318 - 14483065
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||| || |
|
|
| T |
14483318 |
agtttcttcacagctacaacctgtcctgtaggcaactctgctttgtaaacacttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttttg |
14483219 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || ||||| ||||||||||||| |||||| |||||||||| |||||||||||||| || |||||||| || |||| ||||||| | |
|
|
| T |
14483218 |
tggcttcgataatgttctcgtacaccatttttcaatcaaaactccatattgaaaatagattttcagggtgtgattcttctgcaaccttggattctttttt |
14483119 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaa |
268 |
Q |
| |
|
| ||||||| ||| | | | |||||||| ||||||||||||||||||||||| |
|
|
| T |
14483118 |
gtttgaagttcgaaatagataatatgagataccataaacaaataatgctaacaa |
14483065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 141
Target Start/End: Complemental strand, 15041154 - 15041025
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagat---tcttgttgtcaaaatctt |
111 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
15041154 |
agtttcttcacagctaccacttgaccagtaggcaactctgctttgtaatcacttccatgtactccaaccccaatgagattgatcttgctgtcaaaatctt |
15041055 |
T |
|
| Q |
112 |
ctgtggcttcgatgatattctcatacacca |
141 |
Q |
| |
|
| |||||||||||||||||||||||||||| |
|
|
| T |
15041054 |
cagtggcttcgatgatattctcatacacca |
15041025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 299 - 389
Target Start/End: Complemental strand, 15041029 - 15040937
Alignment:
| Q |
299 |
caccaaaattttgttagttttatga--ctatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||| ||||| | ||| |||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
15041029 |
caccaaaattgtgttagtattatgagactatgaaagttgccaccagatgttgagcaatgctctaggccagagacattaccacacaagcctttg |
15040937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 13355 - 12972
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
13355 |
agtttcttcacagctacaacttgacctgaaggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctg |
13256 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | |||||| ||||||| | |
|
|
| T |
13255 |
tggcttcgattatgttctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttt |
13156 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| | | || ||||||||| |||||||||||||||||||||||||| || || |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
13155 |
tcttgaagtgtggtagaaaaggtatgagaacccataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgtta |
13056 |
T |
|
| Q |
315 |
gttttatgac---------tatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| ||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
13055 |
gtcttatgactatgaaagttatgaaagtttccacctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg |
12972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 7055 - 6684
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||| ||| |||| | ||| ||||||| |||||||||||| ||||| | |
|
|
| T |
7055 |
agtttcttcaccgctacaacttgtcctgtggggaactctgctttgtaaacacttccgtgtcctcctatcccaatgagatgcttgttgtcaaactcttcag |
6956 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
| ||||| | || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||| |
|
|
| T |
6955 |
ttgcttcaacaatgttctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgt |
6856 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| ||||| || || |||||| ||||||| |||||||||| |||||| || ||||||||||| || |||||| | ||||||||| | ||| |
|
|
| T |
6855 |
gcttgaagttcgacataaaaggcatgagaggccataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgttta |
6756 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| ||||||||||| ||||| | |||| |||||||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
6755 |
gtcttatgactatgaaagttaccacctaatgttgagcaaggctctaagccagag---ttaccacacaagcctttg |
6684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 13998 - 13615
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
13998 |
agtttcttcacagctacaacttgacctgaaggcaactctgctttgtaaacatttccatgtcctccaaccccaatgagatgcttgttgtcaaaatcttctg |
13899 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || |||||||| |||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||| | |||||| ||||||| | |
|
|
| T |
13898 |
tggcttcgattatgttctcatataccatttttccatcaaagctccatgttgcaaagagattttcagtttgaaattcttctgtaggcttgtattctttttt |
13799 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| | | || ||||||||| |||||||||||||||||||||||||| || || |||||||||| ||||||||| |||||||||||||| |
|
|
| T |
13798 |
tcttgaagtgtggtagaaaaggtatgagaacccataaacaaataatgctaacaatagagttccaagagtgaggggtaaaactagatccaaaattttgtta |
13699 |
T |
|
| Q |
315 |
gttttatgac---------tatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| ||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
13698 |
gtcttatgactatgaaagttatgaaagtttccacctgatgttgagcaaggctctagaccagagacattaccacacaagcctttg |
13615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 15 - 389
Target Start/End: Complemental strand, 7699 - 7328
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || ||||||||||||||||||||||| ||| |||| | ||| ||||||| |||||||||||| ||||| | |
|
|
| T |
7699 |
agtttcttcaccgctacaacttgtcctgtggggaactctgctttgtaaacacttccgtgtcctcctatcccaatgagatgcttgttgtcaaactcttcag |
7600 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
| ||||| | || ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||||||||| |
|
|
| T |
7599 |
ttgcttcaacaatgttctcatacaccaattttccatcaaagctccatattgcaaatagattttcagtttgaaattctcctgcagtcttgtattcttttgt |
7500 |
T |
|
| Q |
215 |
gcttgaagtgcgacaaaattggtatgagatcccataaacaaataatgctaacaataaagggcctagagtgagggataaaactagcaccaaaattttgtta |
314 |
Q |
| |
|
||||||||| ||||| || || |||||| ||||||| |||||||||| |||||| || ||||||||||| || |||||| | ||||||||| | ||| |
|
|
| T |
7499 |
gcttgaagttcgacataaaaggcatgagaggccataaagaaataatgctgacaatagagtgcctagagtgatgggtaaaacaaccaccaaaatgtgttta |
7400 |
T |
|
| Q |
315 |
gttttatgactatggaagtttctacctgatgttgagcaaggctctaggccagagacattaccgcacaagcctttg |
389 |
Q |
| |
|
|| ||||||||||| ||||| | |||| |||||||||||||||||| ||||||| ||||| |||||||||||| |
|
|
| T |
7399 |
gtcttatgactatgaaagttaccacctaatgttgagcaaggctctaagccagag---ttaccacacaagcctttg |
7328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 17027456 - 17027248
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| ||||| || | ||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||| ||||| | |
|
|
| T |
17027456 |
agtttcttcacagctacaacttgtccaataggcaactctgcttggtaaacacttccatgacctccaaccccaatgagatacttgttgtcaaactcttcgg |
17027357 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
17027356 |
tggcttcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgt |
17027257 |
T |
|
| Q |
215 |
gcttgaagt |
223 |
Q |
| |
|
||||||| |
|
|
| T |
17027256 |
cattgaagt |
17027248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 17557948 - 17557740
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||||||||||||||| ||||| || | ||||||||||||| ||||||||||||||| |||||||||| ||||||| |||||||||||| ||||| | |
|
|
| T |
17557948 |
agtttcttcacagctacaacttgtccaataggcaactctgcttggtaaacacttccatgacctccaaccccaatgagatacttgttgtcaaactcttcgg |
17557849 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttcagtttgaaattcttctacatgcttgtcttcttttgt |
214 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
17557848 |
tggcttcgataatgttctcatacaccatttttccatcaaagctccatactgcaaatagattatcagtttgaaattattctgtcggcttgtattcttttgt |
17557749 |
T |
|
| Q |
215 |
gcttgaagt |
223 |
Q |
| |
|
||||||| |
|
|
| T |
17557748 |
cattgaagt |
17557740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 15 - 177
Target Start/End: Complemental strand, 17849095 - 17848933
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||| |||||||| || ||||||||||| |||| | ||||||||||||||||| || |||| || |||||||||| || | ||||||||||||| |
|
|
| T |
17849095 |
agttttttcacagccactacttgacctgtgtccaacacggctttgtaaacacttccctgccctcctactccgatgagatgtttatcatcaaaatcttctg |
17848996 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
||||||| || ||| ||||||||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
17848995 |
tggcttcaataatactctcatacaccatttttccatcaaaactccatatggtaaatagatttt |
17848933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 15664787 - 15664949
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||| || ||||| || ||||||||||| ||||||| |||||||||||||||||| || |||| | || ||||||| ||||| ||||| ||||| | |
|
|
| T |
15664787 |
agttttttaacagcaactacttgacctgtgggcaactttgctttgtaaacacttccttgcgctcctgctccaatgagatgcttgtcatcaaactcttccg |
15664886 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
| ||||| || || ||||||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
15664887 |
ttgcttcaataatgttctcatacaccattttcccatcaaaactccatattgtaaatacatttt |
15664949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 51 - 177
Target Start/End: Original strand, 17825679 - 17825805
Alignment:
| Q |
51 |
tctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctgtggcttcgatgatattctcatacaccatttttccat |
150 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| || | |||||||| |||||||||| || |||||||||||||||||||| ||| |
|
|
| T |
17825679 |
tctgctttgtaaacacttccatgccctccaactccgatgagatgtttatcatcaaaatcgtctgtggcttgaataatattctcatacaccattttgtcat |
17825778 |
T |
|
| Q |
151 |
caaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
|||| |||||||| ||||||||||||| |
|
|
| T |
17825779 |
caaaactccatatggtaaatagatttt |
17825805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 14606465 - 14606309
Alignment:
| Q |
21 |
ttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctgtggctt |
120 |
Q |
| |
|
|||||||| || ||||||||||| |||||| ||||||||| ||||||||||| ||||||| || ||||||| || | ||||||||||||||||||| |
|
|
| T |
14606465 |
ttcacagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctccaactccaatgagatgtttttcatcaaaatcttctgtggctt |
14606366 |
T |
|
| Q |
121 |
cgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
| | || |||||||||| | ||||||||||||| |||||||||||| || ||||| |
|
|
| T |
14606365 |
ccaaaatgttctcatacaaaaattttccatcaaagttccatattgtaagtacatttt |
14606309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 16025642 - 16025486
Alignment:
| Q |
21 |
ttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctgtggctt |
120 |
Q |
| |
|
|||||||| || ||||||||||| |||||| ||||||||| ||||||||||| ||||||| || ||||||| || | ||||||||||||||||||| |
|
|
| T |
16025642 |
ttcacagcaactacttgacctgtgtgcaactttgctttgtagacacttccatgccctccaactccaatgagatgtttttcatcaaaatcttctgtggctt |
16025543 |
T |
|
| Q |
121 |
cgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
| | || |||||||||| | ||||||||||||| |||||||||||| || ||||| |
|
|
| T |
16025542 |
ccaaaatgttctcatacaaaaattttccatcaaagttccatattgtaagtacatttt |
16025486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 15676630 - 15676783
Alignment:
| Q |
24 |
acagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctgtggcttcga |
123 |
Q |
| |
|
||||| || |||||||||| |||| |||||||||||||| |||| || |||| || || ||||||| ||||| ||||| |||| ||||||||| | |
|
|
| T |
15676630 |
acagcaactacttgacctgaatgcaaatctgctttgtaaacttttccttgcgctcctactccaatgagatgcttgtcatcaaactcttatgtggcttcaa |
15676729 |
T |
|
| Q |
124 |
tgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
| || ||||||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
15676730 |
ttatgttctcatacaccattttcccatcaaaactccatattgtaaatacatttt |
15676783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 16173118 - 16172970
Alignment:
| Q |
21 |
ttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctgtggctt |
120 |
Q |
| |
|
|||||||| || ||||||||||| | ||||||||||||||||||||||| || ||||||| || || |||| |||| |||||||||| |||||||| |
|
|
| T |
16173118 |
ttcacagcaactacttgacctgtgtgtaactctgctttgtaaacacttccttgccctccaactccaataagatatttgtcatcaaaatcttgtgtggctt |
16173019 |
T |
|
| Q |
121 |
cgatgatattctcatacaccatttttccatcaaagctccatattgtaaa |
169 |
Q |
| |
|
| | ||| ||||| || |||||||||||||| || ||||||||||||| |
|
|
| T |
16173018 |
ccaagatgttctcgtagaccatttttccatcgaaattccatattgtaaa |
16172970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 16103450 - 16103293
Alignment:
| Q |
21 |
ttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctgtggctt |
120 |
Q |
| |
|
|||||||| || ||||| || || |||||| ||||||||| ||||||||||| | ||||| || || |||| || | ||||||||||||||||||| |
|
|
| T |
16103450 |
ttcacagcaactacttggcccgtgtgcaactttgctttgtagacacttccatgccccccaacaccaattagatgtttctcatcaaaatcttctgtggctt |
16103351 |
T |
|
| Q |
121 |
cgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagattttc |
178 |
Q |
| |
|
| | || || ||| |||| ||||||||||||||| ||||||||||||||| |||||| |
|
|
| T |
16103350 |
ccacaatgttttcaaacacaatttttccatcaaagttccatattgtaaatacattttc |
16103293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 388
Target Start/End: Complemental strand, 16025316 - 16025269
Alignment:
| Q |
341 |
tgatgttgagcaaggctctaggccagagacattaccgcacaagccttt |
388 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
16025316 |
tgatgttgggcagggctctaagccagagacattaccacacaagccttt |
16025269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 5113 - 5275
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||| || ||||| || |||||||||| |||||||||||||||||||||||||| || |||| | || ||||||| ||||| ||||| ||||||| |
|
|
| T |
5113 |
agttttttaacagcaactacttgacctgagggcaactctgctttgtaaacacttccttgcgctcctagtccaatgagatgcttgtcatcaaactcttctg |
5212 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
||||||| || || ||||||||||||||||| |||||||| |||||||| ||||||| ||||| |
|
|
| T |
5213 |
tggcttcaataatgttctcatacaccattttcccatcaaaactccatatagtaaatacatttt |
5275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 13946 - 14108
Alignment:
| Q |
15 |
agtttcttcacagctaccacttgacctgttggcaactctgctttgtaaacacttccatgtactccaaccccgatgagattcttgttgtcaaaatcttctg |
114 |
Q |
| |
|
||||| || ||||| || |||||||||| |||||||||||||||||||||||||| || |||| | || ||||||| ||||| ||||| ||||||| |
|
|
| T |
13946 |
agttttttaacagcaactacttgacctgagggcaactctgctttgtaaacacttccttgcgctcctagtccaatgagatgcttgtcatcaaactcttctg |
14045 |
T |
|
| Q |
115 |
tggcttcgatgatattctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
||||||| || || ||||||||||||||||| |||||||| |||||||| ||||||| ||||| |
|
|
| T |
14046 |
tggcttcaataatgttctcatacaccattttcccatcaaaactccatatagtaaatacatttt |
14108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 177
Target Start/End: Original strand, 17769 - 17817
Alignment:
| Q |
129 |
ttctcatacaccatttttccatcaaagctccatattgtaaatagatttt |
177 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||| ||||| |
|
|
| T |
17769 |
ttctcatacaccattttcccatcaaaactccatattgtaaatacatttt |
17817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 37027247 - 37027186
Alignment:
| Q |
102 |
tcaaaatcttctgtggcttcgatgatattctcatacaccatttttccatcaaagctccatat |
163 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||| ||||||||||||||| | |||||||| |
|
|
| T |
37027247 |
tcaaaatcctctgtggcttcaatgatattttcataaaccatttttccatcataactccatat |
37027186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University