View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_low_12 (Length: 382)
Name: NF2314_low_12
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 55100605 - 55100964
Alignment:
| Q |
10 |
aaaaatattcaaagtattgtggtaaataaaaaacaattcttagtagtgtttgccaagtgaaaagcagnnnnnnnnn-taattacaagtctaacaatcaaa |
108 |
Q |
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| T |
55100605 |
aaaaaaattcaaagtattgtggtaaataaaaaacaattcttagtagtgttagccaagtgaaaagcagaaaaaaataataattacaagtccaacagtcaaa |
55100704 |
T |
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| Q |
109 |
atttctcgagggttgttgatatttgtgagtactgctctataggcctccacattgctgggaaaaactcccatttatcggaatgtatcttccgttaagcnnn |
208 |
Q |
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| T |
55100705 |
atttctcgagggttgttgatatttgtgagtactgctctataggcctccacattgctgggaaaagctcccatttatcggaatgtatcttccgtttagcttt |
55100804 |
T |
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| Q |
209 |
nnnncccactcaaatctaaatctattggattctactttcgaatgcac--nnnnnnnnnccaacttaagtaatgtagggggcctagacagagtatccgaat |
306 |
Q |
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| T |
55100805 |
ttttcccactcaaatctaaatctattggattctactttcgaatgcacttttttttttcccagcttaagtaatgtagggggcctagacagagtatccgaat |
55100904 |
T |
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| Q |
307 |
atttgtttgcaannnnnnnggattaaagtccaaaaaatagaaactacacgaagcagttga |
366 |
Q |
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| T |
55100905 |
atttgtttgcaatttttttggattaaagtccaaaaaatagaaactacacgaagcagttga |
55100964 |
T |
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