View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_low_13 (Length: 380)
Name: NF2314_low_13
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 16700965 - 16700809
Alignment:
| Q |
18 |
actagaataaagttggtaaaatgagttgaattattttgccacgccattctgatatgtcaaaatagatgtgtgttgttgnnnnnnnattaaaaataaagtg |
117 |
Q |
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| T |
16700965 |
actagaataaagttggtaaaatgagttgaattattttgccacgccattctgatatgtcaaaatagatgtgtgttgttgtttttttattaaaaataaagtg |
16700866 |
T |
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| Q |
118 |
agttagccaacaaaataacttgtccttattttataatagttttgctgacaacaagac |
174 |
Q |
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| T |
16700865 |
agttagccaacaaaataacttgtccttattttatgatagttttgctgacaacaagac |
16700809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 255 - 363
Target Start/End: Complemental strand, 16700728 - 16700620
Alignment:
| Q |
255 |
tggaattggtttaagtttgagataatgcctttaaaaagttgagattagggaataaaatgtatcatagattatattcatatgatatgttcattttgttgca |
354 |
Q |
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| T |
16700728 |
tggaattggtttaagtttgagataatgcctttaaaaagttgagattagggaataaaatgtatcatatattatattcatatgatatgttcattttgttgca |
16700629 |
T |
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| Q |
355 |
taaccctac |
363 |
Q |
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| T |
16700628 |
taaccctac |
16700620 |
T |
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