View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2314_low_15 (Length: 366)
Name: NF2314_low_15
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_15 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 28535412 - 28535765
Alignment:
| Q |
13 |
tcatcatacctgggcaagaaaacattccaatccacttggacaagtaagaatattgttttacattgatggtaactagtatttgctttctttgctaaacaaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28535412 |
tcatcatacctgggcaagaaaacattccaatccacttggacaagtaagaatattgttttacattgatggtaactagtatttgctttctttgctaagcaaa |
28535511 |
T |
|
| Q |
113 |
caatttcttgttttcattggcatctctttgaattttgtttttcttcatatgtgtttgaagtttgaataaatcaacatgtatgtattataatctgacagaa |
212 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28535512 |
cgatttcttgttttcattggcatctctttgaattttgtttttcttcatatgtgtttgaagtttgaataaatcaacatgtatgtattataatctgacagaa |
28535611 |
T |
|
| Q |
213 |
tttctttgtgaactatactatgcagatccatggatataggatgtcactttgggcagaacatactggaacaattgatgactgcttcttgcagcctgagagc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
28535612 |
tttctttgtgaactatactatgcagatccatggatataggatgtcactttgggcagaacatactggaacaattgatgactgcttcttgcaacctgagagc |
28535711 |
T |
|
| Q |
313 |
cttgaatgcgtgcgaaaggttagagaaattggtgaaatgaactggaaacaattt |
366 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
28535712 |
cttgaatgcgtgcgaaaggttagagcaattggtgaaatgaactggaaacaattt |
28535765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 366
Target Start/End: Complemental strand, 12689879 - 12689736
Alignment:
| Q |
223 |
aactatactatgcagatccatggatataggatgtcactttgggcagaacatactggaacaattgatgactgcttcttgcagcctgagagccttgaatgcg |
322 |
Q |
| |
|
|||| ||||||| || | ||||||||||||||||| || |||||||||||||| || ||||| || ||||| ||||| || || |||||||| || || | |
|
|
| T |
12689879 |
aactctactatgtaggttcatggatataggatgtccctatgggcagaacatacaggcacaatcgaagactgtttcttacaaccagagagcctcgactgtg |
12689780 |
T |
|
| Q |
323 |
tgcgaaaggttagagaaattggtgaaatgaactggaaacaattt |
366 |
Q |
| |
|
|| ||| |||| || ||| ||||||||||||||||||||| |
|
|
| T |
12689779 |
tgagaagggttcgaacaatgtccgaaatgaactggaaacaattt |
12689736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University