View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2314_low_16 (Length: 337)
Name: NF2314_low_16
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 48654081 - 48654366
Alignment:
| Q |
11 |
aagaatatatagccacatatatgctaaaaattacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacattta |
110 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48654081 |
aagaatatatcaccacatatatgctaaaaataacaatacaagcatttttctccggtaaataatatagtcacatatatactataataaaattaaacattta |
48654180 |
T |
|
| Q |
111 |
ttaatttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttataatactcacattatcatatttttcctttcgttg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || ||| |
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| T |
48654181 |
ttaatttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttctaatactcacatcatcatatttttcctctctttg |
48654280 |
T |
|
| Q |
211 |
gtttttcaaaaacaaattctaacatttctttcctacatcacaaaaacaaataaagcataaacttttgtaaacggttaaatattacca |
297 |
Q |
| |
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||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48654281 |
gtttttc-aaaacaaattctaacatttatttcctacatcacaaaaacaaataaagcataaacttttgtaaactgttaaatattacca |
48654366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 48576666 - 48576605
Alignment:
| Q |
126 |
agaatttcagcaaccatataatcattatttctaagatttataccctttttataatactcaca |
187 |
Q |
| |
|
|||||||||| || |||| |||||||||||||| ||||||| |||||| |||| ||||||| |
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|
| T |
48576666 |
agaatttcaggtactatatcatcattatttctaacatttatatccttttcataaaactcaca |
48576605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 28267398 - 28267682
Alignment:
| Q |
14 |
aatatatagccacatatat-gctaaaaattacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttatt |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
28267398 |
aatatatagccacatatattgctaaaaataacactacaagcatttttctacaggaaataatatagtcacatatatactataatagatttaaacatttatt |
28267497 |
T |
|
| Q |
113 |
aatttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttataatactcacattatcatatttttcctttcgttggt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
28267498 |
aatttatccaggaagaatttcagcaaccatataatcattatttctaaaatttataccctttttacaatactcacattatcatatttttcctttctttggt |
28267597 |
T |
|
| Q |
213 |
ttttcaaaaacaaattctaacatttctttcct-acatcacaaaaacaaataaagcataaacttttgtaaacggttaaatattacca |
297 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
28267598 |
ttttcaaaaa-aaaatctaacatttctttcctaacatcacaaaaacaaataaagcataaacttttgcaaactgttaaatattacca |
28267682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 12774658 - 12774944
Alignment:
| Q |
14 |
aatatatagccacatatatgctaaaaattacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttatta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||||| |
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|
| T |
12774658 |
aatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactatgataaatttaagcatttatta |
12774757 |
T |
|
| Q |
114 |
atttatccaggaagaatttcagcaaccatataatcattatttctaagatttataccctttttataatactcaca-ttatcatatttttcctttcgttggt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
12774758 |
atttatccaggaagaatttcagcaaccatataatcattatttctaaaatttataccctttttataatactcacaattatcatatttttcctttctttggt |
12774857 |
T |
|
| Q |
213 |
ttttcaaaaacaaattctaacatttctttccta-catcacaaaaacaaataaagcat----aaacttttgtaaacggttaaatattacca |
297 |
Q |
| |
|
|||||||||| | |||||||||||||| ||| ||||||||||||||||||||||| || |||||||||| |||||||||||||| |
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|
| T |
12774858 |
ttttcaaaaaaa---tctaacatttcttttctaacatcacaaaaacaaataaagcatgcataattttttgtaaactgttaaatattacca |
12774944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 57 - 297
Target Start/End: Original strand, 18473834 - 18474070
Alignment:
| Q |
57 |
tttctccgggaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagcaaccatataatcattatttc |
156 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18473834 |
tttctccgggaaataata--gtcacatatatactataataaaattaaacattt--taatttatccaggaagaatttcagcaaccatataatcattatttc |
18473929 |
T |
|
| Q |
157 |
taagatttataccctttttataatactcacattatcatatttttcctttcgttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaaa |
256 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18473930 |
taagatttatatcctttttataatactcacattatcatatttttcctttctttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaaa |
18474029 |
T |
|
| Q |
257 |
caaataaagcataaacttttgtaaacggttaaatattacca |
297 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18474030 |
caaataaagcataaacttttgtaaactgttaaatattacca |
18474070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 33007968 - 33008019
Alignment:
| Q |
37 |
aaaattacactacaagcatttttctccgggaaataatatagtcacatatatac |
89 |
Q |
| |
|
||||| |||| ||||| |||||||||| |||||||||||||| |||||||||| |
|
|
| T |
33007968 |
aaaataacaccacaagtatttttctccaggaaataatatagt-acatatatac |
33008019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 156 - 298
Target Start/End: Original strand, 13777096 - 13777238
Alignment:
| Q |
156 |
ctaagatttataccctttttataatactcacattatcatatttttcctttcgttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaa |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13777096 |
ctaagatttataccctttttataatactcacattatcatatttttcctttctttggtttttcaaaaacaaattctaacatttctttcctacatcacaaaa |
13777195 |
T |
|
| Q |
256 |
acaaataaagcataaacttttgtaaacggttaaatattaccaa |
298 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13777196 |
acaaataaagcataaacttttgtaaactgttaaatattaccaa |
13777238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 160
Target Start/End: Original strand, 13773667 - 13773815
Alignment:
| Q |
11 |
aagaatatatagccacatatatgctaaaaattacactacaagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacattta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
13773667 |
aagaatatatagccacatatatgctaaaaataacactacaagcatttttctccaggaaataatatagtcacatatatactataataaaattaaa-attta |
13773765 |
T |
|
| Q |
111 |
ttaatttatccaggaagaatttcagcaaccatataatcattatttctaag |
160 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13773766 |
ttaatttattcaggaagaatttcagcaaccatataatcattatttctaag |
13773815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 50 - 157
Target Start/End: Complemental strand, 42861198 - 42861091
Alignment:
| Q |
50 |
aagcatttttctccgggaaataatatagtcacatatatactataataaaattaaacatttattaatttatccaggaagaatttcagcaaccatataatca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42861198 |
aagcatttttctccgggaaataatatagtcacatatatactataatataattaaacatttattaatttatccaggaagaatttcagcaaccatataatca |
42861099 |
T |
|
| Q |
150 |
ttatttct |
157 |
Q |
| |
|
|||||||| |
|
|
| T |
42861098 |
ttatttct |
42861091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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