View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2314_low_17 (Length: 331)
Name: NF2314_low_17
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 23 - 330
Target Start/End: Original strand, 40642529 - 40642830
Alignment:
| Q |
23 |
aattcatttcttgaccttcaacattctcatgcacattcccacatttcgacaagacggtgatgagaaatattgagcttcagagcgaacatcgtgatcctct |
122 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40642529 |
aattcatctcttgaccttcaacattctcatgcacattcccacatttcgacaaggcggtgatgagaaatattgagcttcagagtgaacatcgtgatcctct |
40642628 |
T |
|
| Q |
123 |
ttctcctcctcaccatcattacttgtaaaattaccttgtcactagtaataatttataattgcatacaaaaacaaaattatagtgaaatgataactaagta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40642629 |
ttctcctcctcaccatcattacttgtaaaattaccttgtcactagta-------ataattgcatacaaaaacaaaattatagtgaaatgataactaagta |
40642721 |
T |
|
| Q |
223 |
cttaataaaaaattataaactacgaatag-aaaacattgctaatgattgttcatctgaaccattgttggatacattaatttcattatgttcctccctttg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40642722 |
cttaataaaaaattataaactacgaatagaaaaacattgctaatgattgttcatctgaaccattgttggatacattaatttcattatgttcctccctctg |
40642821 |
T |
|
| Q |
322 |
ctactcctc |
330 |
Q |
| |
|
|| |||||| |
|
|
| T |
40642822 |
ctcctcctc |
40642830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University