View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2314_low_18 (Length: 320)

Name: NF2314_low_18
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2314_low_18
NF2314_low_18
[»] chr3 (6 HSPs)
chr3 (1-302)||(35776244-35776545)
chr3 (140-302)||(35854559-35854721)
chr3 (140-289)||(35869181-35869330)
chr3 (140-289)||(35842064-35842213)
chr3 (140-294)||(35759827-35759981)
chr3 (140-298)||(35737998-35738156)
[»] scaffold1335 (1 HSPs)
scaffold1335 (131-289)||(1828-1986)
[»] scaffold0891 (1 HSPs)
scaffold0891 (251-289)||(1-39)
[»] chr6 (14 HSPs)
chr6 (230-282)||(4482283-4482335)
chr6 (230-274)||(4575881-4575925)
chr6 (230-274)||(4627576-4627620)
chr6 (227-274)||(4258831-4258878)
chr6 (230-270)||(3173433-3173473)
chr6 (230-270)||(4265715-4265755)
chr6 (227-267)||(4462640-4462680)
chr6 (230-270)||(4488855-4488895)
chr6 (230-274)||(4513637-4513681)
chr6 (230-274)||(4517766-4517810)
chr6 (230-270)||(4558555-4558595)
chr6 (230-270)||(4587062-4587102)
chr6 (230-274)||(4594436-4594480)
chr6 (230-274)||(4603536-4603580)
[»] chr2 (1 HSPs)
chr2 (234-270)||(1349579-1349615)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 35776545 - 35776244
Alignment:
Q  1 tctgaccgccctccaagcagggcaaatctaaaaccccaccgccattgtacaagtttgtctcgtataaattcacaaacattgtaacaatagtgatatttga 100  Q
    |||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35776545 tctgaccgacctccaagcagggcaaatctatatcaccaccgccattgtacaagtttgtctcgtataaattcacaaacattgtaacaatagtgatatttga 35776446  T
Q  101 acaaaaatggattcttattctccctctacgcatatccatcaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgc 200  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35776445 acaaaaatggattcttattctccctctacgcatattcaacaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgc 35776346  T
Q  201 aattagccaaactcctacgttgcaacggttttcacataacctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggacaagactttgt 300  Q
    || | ||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35776345 aacttgccaaactctttcgttgcaaaggttttcacataacctttgtgaacactgaattcaaccacaaacgtttgataaaatcgcttggacaagactttgt 35776246  T
Q  301 ga 302  Q
    ||    
T  35776245 ga 35776244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 140 - 302
Target Start/End: Complemental strand, 35854721 - 35854559
Alignment:
Q  140 caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa 239  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35854721 caaaagcctcatgttgtattagtaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa 35854622  T
Q  240 cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggacaagactttgtga 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35854621 cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggacaagactttgtga 35854559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 140 - 289
Target Start/End: Complemental strand, 35869330 - 35869181
Alignment:
Q  140 caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa 239  Q
    ||||||||||||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35869330 caaaagcctcatgttgtattagcaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa 35869231  T
Q  240 cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttgga 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35869230 cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttgga 35869181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 140 - 289
Target Start/End: Complemental strand, 35842213 - 35842064
Alignment:
Q  140 caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa 239  Q
    |||||||| |||| |||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35842213 caaaagccacatgttgtattagcaccatttccagcacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa 35842114  T
Q  240 cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttgga 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35842113 cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttgga 35842064  T

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Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 140 - 294
Target Start/End: Complemental strand, 35759981 - 35759827
Alignment:
Q  140 caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggttttcacataa 239  Q
    |||||||  ||||||||||| || ||||  |||| ||| |||||||| || || || |||||| |||| |||||||| |||||||||||||| |||||||    
T  35759981 caaaagctacatgctgtattagtgccatacccagcacagggtcatgttaatcccttaatgcaactagctaaactcctgcgttgcaacggtttccacataa 35759882  T
Q  240 cctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggacaaga 294  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  35759881 cctttgtgaacactgaattcaaccacaaacgtttggtaaactcacttggacaaga 35759827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 140 - 298
Target Start/End: Complemental strand, 35738156 - 35737998
Alignment:
Q  140 caaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaac---ggttttcaca 236  Q
    |||||||||||||  || | |||||||||||||| ||||||||| || |||||||||||||||||||| ||| ||||   |  |||    ||||| ||||    
T  35738156 caaaagcctcatgtagtttgtgtaccatttccagcacaaggtcacgtaaaccctttcatgcaattagctaaaatcct---taacaaacttggtttccaca 35738060  T
Q  237 taacctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttggacaagacttt 298  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  35738059 taacctttgtgaacaatgaattcaaccacaaacgtttgataaaatctcttggacatgacttt 35737998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1335 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold1335
Description:

Target: scaffold1335; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 131 - 289
Target Start/End: Original strand, 1828 - 1986
Alignment:
Q  131 catatccatcaaaagcctcatgctgtatttgtaccatttccagtacaaggtcatgtgaaccctttcatgcaattagccaaactcctacgttgcaacggtt 230  Q
    |||| ||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||  | |||||| ||||||||||| | |||||||| ||||    
T  1828 catacccaacaaaaaccacatgctgtatttgtaccatttccagcacaaggtcatgtgaacccaatgatgcaactagccaaactcttccgttgcaaaggtt 1927  T
Q  231 ttcacataacctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttgga 289  Q
    | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1928 tccatataacctttgtgaacactgaattcaaccacaaacgtttgataaaatctcttgga 1986  T

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Target: scaffold0891 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 1 - 39
Alignment:
Q  251 actgaattcaaccacaaacgtttgataaaatctcttgga 289  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1 actgaattcaaccacaaacgtttgataaaatctcttgga 39  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 4482335 - 4482283
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacgtttgataaaatc 282  Q
    ||||||||||||||||| ||||| |||| ||| |||||||||||| |||||||    
T  4482335 tttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatc 4482283  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 4575925 - 4575881
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacgtttg 274  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||    
T  4575925 tttcacataacctttgttaacactgaatacaatcacaaacgtttg 4575881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 4627620 - 4627576
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacgtttg 274  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||    
T  4627620 tttcacataacctttgtcaacactgaatacaatcacaaacgtttg 4627576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 274
Target Start/End: Original strand, 4258831 - 4258878
Alignment:
Q  227 ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg 274  Q
    |||||||||||||||||||| ||||||||||  || ||||||||||||    
T  4258831 ggttttcacataacctttgtcaacactgaatataatcacaaacgtttg 4258878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 3173473 - 3173433
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacg 270  Q
    ||||||||||||||||| |||||||||| ||| ||||||||    
T  3173473 tttcacataacctttgtaaacactgaatacaatcacaaacg 3173433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 4265715 - 4265755
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacg 270  Q
    ||||||||||||||||| |||||||||| ||| ||||||||    
T  4265715 tttcacataacctttgtcaacactgaatacaatcacaaacg 4265755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 4462680 - 4462640
Alignment:
Q  227 ggttttcacataacctttgtgaacactgaattcaaccacaa 267  Q
    |||||||||||||||||||| |||||||||| ||| |||||    
T  4462680 ggttttcacataacctttgtcaacactgaatacaatcacaa 4462640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 4488855 - 4488895
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacg 270  Q
    ||||||||||||||||| |||||||||| ||| ||||||||    
T  4488855 tttcacataacctttgtcaacactgaatacaatcacaaacg 4488895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 4513637 - 4513681
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacgtttg 274  Q
    ||||||||||||||||| ||||| |||| ||| ||||||||||||    
T  4513637 tttcacataacctttgttaacaccgaatacaatcacaaacgtttg 4513681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 4517810 - 4517766
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacgtttg 274  Q
    ||||||||||||||||| ||||| |||| ||| ||||||||||||    
T  4517810 tttcacataacctttgtcaacaccgaatacaatcacaaacgtttg 4517766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 4558595 - 4558555
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacg 270  Q
    ||||||||||||| ||| |||||||||| ||||||||||||    
T  4558595 tttcacataacctatgtaaacactgaatacaaccacaaacg 4558555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 4587102 - 4587062
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacg 270  Q
    ||||||||||||||||| |||||||||| ||| ||||||||    
T  4587102 tttcacataacctttgtaaacactgaatacaatcacaaacg 4587062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 4594480 - 4594436
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacgtttg 274  Q
    ||||||||||||||||| |||||||||| ||| || |||||||||    
T  4594480 tttcacataacctttgtcaacactgaatacaatcataaacgtttg 4594436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 4603580 - 4603536
Alignment:
Q  230 tttcacataacctttgtgaacactgaattcaaccacaaacgtttg 274  Q
    ||||||||||||||||| ||||| |||| ||| ||||||||||||    
T  4603580 tttcacataacctttgtcaacaccgaatacaatcacaaacgtttg 4603536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 1349579 - 1349615
Alignment:
Q  234 acataacctttgtgaacactgaattcaaccacaaacg 270  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  1349579 acataacatttgtcaacactgaattcaaccacaaacg 1349615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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