View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2314_low_19 (Length: 299)

Name: NF2314_low_19
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2314_low_19
NF2314_low_19
[»] chr5 (1 HSPs)
chr5 (16-299)||(29143611-29143895)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 16 - 299
Target Start/End: Original strand, 29143611 - 29143895
Alignment:
Q  16 atcaaaagtaaaggagattatcttttattcttaataactgtaaattatactgtatttctataattaaataaattttcatgttgcttctatttaaaattag 115  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29143611 atcaaaagtaaaggagattatcttttattcttaataactgtgaattatactgtatttctataattaaataaattttcatgttgcttctatttaaaattag 29143710  T
Q  116 accgagtaagggtaataatagtaggtggaataacttgtgatatttgttgagacaacttcttatcatatatggttataatgtattttcagcttttgttaag 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29143711 atcgagtaagggtaataatagtaggtggaataacttgtgatatttgttgagacaacttcttatcatatatggttataatgtattttcagcttttgttaag 29143810  T
Q  216 acaacttctcatagc-nnnnnnngtgatttcgcttaattttgtaatttcaatgcaggtggattaaatttttaaccacttacggta 299  Q
    |||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29143811 acaacttctcatagcttttttttgtgatttcgcttaattttgtaatttcaatgcaggtggattaaatttttaaccacttacggta 29143895  T

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