View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2314_low_20 (Length: 295)

Name: NF2314_low_20
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2314_low_20
NF2314_low_20
[»] chr1 (10 HSPs)
chr1 (1-250)||(35063436-35063684)
chr1 (114-249)||(26529508-26529643)
chr1 (122-251)||(36573960-36574089)
chr1 (115-251)||(49917387-49917522)
chr1 (145-251)||(36575494-36575600)
chr1 (162-254)||(26531064-26531156)
chr1 (163-249)||(49919676-49919762)
chr1 (206-251)||(26530500-26530545)
chr1 (145-249)||(35062564-35062668)
chr1 (206-251)||(36574954-36574999)
[»] chr5 (5 HSPs)
chr5 (1-249)||(38921455-38921702)
chr5 (48-249)||(35968556-35968757)
chr5 (114-248)||(16727813-16727947)
chr5 (251-295)||(9887895-9887939)
chr5 (114-152)||(16306739-16306777)
[»] chr4 (11 HSPs)
chr4 (1-251)||(30829925-30830173)
chr4 (1-252)||(52190171-52190433)
chr4 (122-250)||(52189185-52189313)
chr4 (114-236)||(31409326-31409445)
chr4 (163-251)||(8480923-8481011)
chr4 (166-249)||(41774644-41774727)
chr4 (163-248)||(8479652-8479738)
chr4 (206-249)||(41780271-41780314)
chr4 (168-245)||(23545329-23545406)
chr4 (52-100)||(8479843-8479891)
chr4 (47-95)||(31409538-31409585)
[»] chr7 (9 HSPs)
chr7 (1-249)||(41739622-41739869)
chr7 (166-247)||(42537718-42537799)
chr7 (167-249)||(45291932-45292014)
chr7 (192-248)||(40601826-40601882)
chr7 (167-249)||(45296057-45296139)
chr7 (167-249)||(38516620-38516702)
chr7 (197-250)||(40600710-40600763)
chr7 (115-152)||(25272069-25272106)
chr7 (181-249)||(33061554-33061622)
[»] chr8 (11 HSPs)
chr8 (1-250)||(17864517-17864777)
chr8 (124-249)||(17863466-17863591)
chr8 (115-250)||(3870767-3870902)
chr8 (114-249)||(32565560-32565695)
chr8 (117-248)||(3872215-3872346)
chr8 (178-249)||(12887715-12887786)
chr8 (168-249)||(5005708-5005789)
chr8 (115-252)||(32564504-32564641)
chr8 (206-249)||(5014842-5014885)
chr8 (164-249)||(37241028-37241113)
chr8 (183-249)||(12888239-12888305)
[»] chr2 (10 HSPs)
chr2 (114-251)||(4753526-4753663)
chr2 (122-250)||(31622039-31622167)
chr2 (122-250)||(36669089-36669217)
chr2 (113-249)||(40894796-40894932)
chr2 (188-246)||(4755036-4755094)
chr2 (124-249)||(35298556-35298681)
chr2 (166-255)||(35306087-35306176)
chr2 (169-249)||(31620525-31620605)
chr2 (145-254)||(36666196-36666306)
chr2 (206-251)||(31621130-31621175)
[»] chr3 (13 HSPs)
chr3 (167-250)||(37464967-37465050)
chr3 (112-249)||(9099560-9099697)
chr3 (114-249)||(19801786-19801919)
chr3 (125-249)||(20997633-20997757)
chr3 (114-249)||(36163383-36163518)
chr3 (115-255)||(36164503-36164643)
chr3 (114-248)||(37463680-37463814)
chr3 (162-249)||(11137912-11137999)
chr3 (47-95)||(19801947-19801995)
chr3 (181-249)||(18939847-18939915)
chr3 (218-249)||(18912548-18912579)
chr3 (1-95)||(19801947-19802030)
chr3 (122-151)||(20884324-20884353)
[»] chr6 (8 HSPs)
chr6 (115-254)||(18192932-18193071)
chr6 (115-249)||(18191746-18191880)
chr6 (167-251)||(9448745-9448829)
chr6 (114-250)||(30758798-30758934)
chr6 (115-249)||(11020315-11020449)
chr6 (197-251)||(226119-226173)
chr6 (197-249)||(227233-227285)
chr6 (114-151)||(21396392-21396429)
[»] scaffold0115 (4 HSPs)
scaffold0115 (163-249)||(6055-6141)
scaffold0115 (163-249)||(13795-13881)
scaffold0115 (163-249)||(4336-4422)
scaffold0115 (163-249)||(12076-12162)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 35063436 - 35063684
Alignment:
Q  1 tgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 100  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  35063436 tgagtagtgttggagaagatgaa-ggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgttgtcattttggtccctcgtcta 35063534  T
Q  101 tgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||    
T  35063535 tgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttggttcgtttcattgatctagagat 35063634  T
Q  201 gtgcctgatagcgagcaacactttcagggacccaaatgagggtttactct 250  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  35063635 gtgcctgatagtgagcaacactttcagagacccaaatgagggtttactct 35063684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 26529643 - 26529508
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||  |||| |||||||||||||||||||| |||||  ||||| ||| |||||||||    
T  26529643 gttaacatcaagttaacgttttggatgcatttgactaacagaacaaacattgagggagtttttagttcgttttcttgattcagggacgtgtctgatagcg 26529544  T
Q  214 agcaacactttcagggacccaaatgagggtttactc 249  Q
    ||  ||||||||||||||||||||||||||||||||    
T  26529543 aggtacactttcagggacccaaatgagggtttactc 26529508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 251
Target Start/End: Complemental strand, 36574089 - 36573960
Alignment:
Q  122 caagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacac 221  Q
    |||||||||||||||||||||||||||||||| ||||   |||| |||||||||||||||||||| |||||  ||||| |||  ||||||||||  ||||    
T  36574089 caagttaacgttttggatgcatttgactaacggaacagacattgagggagtttttagttcgttttcttgattcagggacgtggttgatagcgaggtacac 36573990  T
Q  222 tttcagggacccaaatgagggtttactctt 251  Q
    ||||||||||| ||||||| ||||||||||    
T  36573989 tttcagggacctaaatgagtgtttactctt 36573960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 115 - 251
Target Start/End: Complemental strand, 49917522 - 49917387
Alignment:
Q  115 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 214  Q
    |||||| ||||||||| |||||||||||||||||||||  | |||  | |  ||||||||||||||| ||  ||||||| | ||||||| || |||||||    
T  49917522 ttaacatcaagttaacattttggatgcatttgactaacagatcaaacaatacgggagtttttagttcattaaattgatccaaggatgtgact-atagcga 49917424  T
Q  215 gcaacactttcagggacccaaatgagggtttactctt 251  Q
    || | |||||||| |||||||||||| ||||||||||    
T  49917423 gctatactttcagagacccaaatgagagtttactctt 49917387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 145 - 251
Target Start/End: Original strand, 36575494 - 36575600
Alignment:
Q  145 tgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtt 244  Q
    ||||||||| ||||   |||| || ||||||| ||||||||| ||||| || ||| ||| |||||||||||  |||||||||||||| ||||||||||||    
T  36575494 tgactaacggaacagacattgaggaagtttttggttcgttttcttgatttaaggacgtgtctgatagcgaggtacactttcagggactcaaatgagggtt 36575593  T
Q  245 tactctt 251  Q
    |||||||    
T  36575594 tactctt 36575600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 162 - 254
Target Start/End: Original strand, 26531064 - 26531156
Alignment:
Q  162 attgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactcttaaa 254  Q
    |||| |||||||||| ||||||||| |||||  ||||| ||| || ||||||||  ||||||||||||||| |||||||||||||||| ||||    
T  26531064 attgagggagtttttggttcgttttcttgattcagggacgtgtctaatagcgaggtacactttcagggaccaaaatgagggtttactcataaa 26531156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 49919676 - 49919762
Alignment:
Q  163 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||||||| || ||||| ||||||| ||||| ||| ||||||||||   ||||||||| ||||||||||||| ||||||||    
T  49919676 ttgggggagtttttggtgcgtttcattgatccagggaagtgactgatagcgatgcacactttcaaggacccaaatgagagtttactc 49919762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 26530545 - 26530500
Alignment:
Q  206 tgatagcgagcaacactttcagggacccaaatgagggtttactctt 251  Q
    ||||||||||  |||||||||||||||||||||| |||||||||||    
T  26530545 tgatagcgaggtacactttcagggacccaaatgaaggtttactctt 26530500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 249
Target Start/End: Complemental strand, 35062668 - 35062564
Alignment:
Q  145 tgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtt 244  Q
    ||||||||| |||||  ||||||||||||||| ||| |||| ||||||  |||||||||  ||||| ||||    ||||| ||| |||||||||| ||||    
T  35062668 tgactaacggaacaaacattgggggagtttttggttagtttaattgattcagggatgtggttgataacgaggtgaacttttaggaacccaaatgaaggtt 35062569  T
Q  245 tactc 249  Q
    |||||    
T  35062568 tactc 35062564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 36574999 - 36574954
Alignment:
Q  206 tgatagcgagcaacactttcagggacccaaatgagggtttactctt 251  Q
    ||||||||||  ||||||||||||||||||||||  ||||||||||    
T  36574999 tgatagcgaggtacactttcagggacccaaatgaaagtttactctt 36574954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 38921702 - 38921455
Alignment:
Q  1 tgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 100  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||| ||||    
T  38921702 tgagtagtgttggagaagatgaa-ggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatcta 38921604  T
Q  101 tgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggat 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| ||||||||||||||    
T  38921603 tgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcatttcattgatctagggat 38921504  T
Q  201 gtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38921503 gtgcctgatagtgagcaacactttcagggacccaaatgagggtttactc 38921455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 48 - 249
Target Start/End: Original strand, 35968556 - 35968757
Alignment:
Q  48 ttgaagaagatgaaggcagaaacatgattgcggtcattttggtccctcgtctatgagtataacggagttaacaccaagttaacgttttggatgcatttga 147  Q
    ||||||||||||| ||| ||||||||||||  |||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  35968556 ttgaagaagatgatggcggaaacatgattgttgtcattttggtccctcatctatgagtataacaaagttaacaccaagttaacgttttggatgcatttga 35968655  T
Q  148 ctaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttac 247  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||| | |||||||||||||||| ||||||||||||||| |||| | |||||||||    
T  35968656 ctaacaaaacaataattgggggagtttttggttcgtttcattgatctatgaatgtgcctgatagcgaacaacactttcagggatccaattaagggtttac 35968755  T
Q  248 tc 249  Q
    ||    
T  35968756 tc 35968757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 16727947 - 16727813
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    ||||||| |||||||| ||||||||||||||||||||||| ||||   |||| || ||||||||||||||||| |||||  ||| | ||| |||||||||    
T  16727947 gttaacatcaagttaatgttttggatgcatttgactaacggaacagacattgaggaagtttttagttcgttttcttgattcaggaacgtggctgatagcg 16727848  T
Q  214 agcaacactttcagggacccaaatgagggtttact 248  Q
    ||  |||||||||| ||||||||||||||||||||    
T  16727847 aggtacactttcagcgacccaaatgagggtttact 16727813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 9887895 - 9887939
Alignment:
Q  251 taaataaaagaattgcactaaagatctttaaaccatatcaattaa 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9887895 taaataaaagaattgcactaaagatctttaaaccatatcaattaa 9887939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 152
Target Start/End: Original strand, 16306739 - 16306777
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaac 152  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  16306739 gttaactccaagttaacgttttagatgcatttgactaac 16306777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 30830173 - 30829925
Alignment:
Q  1 tgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 100  Q
    ||||||| |||| |||||||||| ||||||| |||||||||||||||||||| ||||||| |||||||||||||||| | ||||||||||||||| ||||    
T  30830173 tgagtagtgttgaagaagatgaa-ggaattgagggcattgaagaagattgaaaaagatgatggcagaaacatgattgtg-tcattttggtccctcatcta 30830076  T
Q  101 tgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggat 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  30830075 tgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcgtttcattgatctagggat 30829976  T
Q  201 gtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30829975 gtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 30829925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 52190171 - 52190433
Alignment:
Q  1 tgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 100  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  52190171 tgagtagtgttggagaagatgaa-ggaattgagggcattgaagaagattgaagaagatgaaggcagaaacatgattgttgtcattttggtccctcgtcta 52190269  T
Q  101 tgagtataacgg------------agttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttat 188  Q
    ||||||||||||            | |||||||||||||||||||||||||||||||||||||| |||||   ||||||||||||||| |||||||| ||    
T  52190270 tgagtataacggacacatcagcacatttaacaccaagttaacgttttggatgcatttgactaacaaaacagacattgggggagtttttggttcgtttaat 52190369  T
Q  189 tgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctta 252  Q
    ||||| | |||| || |||||||||||   ||||||||||||||||||||||||||||||||||    
T  52190370 tgatccatggatctggctgatagcgagatgcactttcagggacccaaatgagggtttactctta 52190433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 122 - 250
Target Start/End: Complemental strand, 52189313 - 52189185
Alignment:
Q  122 caagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacac 221  Q
    |||||||||||||||||||||||||||||||| ||||   |||| | ||||||||  || |||| ||||||| ||||||||| |||||||||||   |||    
T  52189313 caagttaacgttttggatgcatttgactaacggaacatacattgagcgagtttttgatttgtttaattgatccagggatgtggctgatagcgaggtgcac 52189214  T
Q  222 tttcagggacccaaatgagggtttactct 250  Q
    |||||||||||||||||||||||||||||    
T  52189213 tttcagggacccaaatgagggtttactct 52189185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 31409445 - 31409326
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    |||||||||||||||||||||||||||||||||||||||| |||   |  || |||||||||| ||||||||  |||||| | ||| |||  ||||||||    
T  31409445 gttaacaccaagttaacgttttggatgcatttgactaacggaac---agatgagggagtttttggttcgtttatttgatccaaggacgtggttgatagcg 31409349  T
Q  214 agcaacactttcagggacccaaa 236  Q
    ||   ||||||||||||||||||    
T  31409348 aggtgcactttcagggacccaaa 31409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 8480923 - 8481011
Alignment:
Q  163 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 251  Q
    |||||||||||||| || ||||| ||||||| ||||| ||| |||||||||||  |||||||||||||| |||||||| ||||| ||||    
T  8480923 ttgggggagtttttggtgcgtttcattgatccagggacgtgactgatagcgagatacactttcagggactcaaatgagagtttattctt 8481011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 41774727 - 41774644
Alignment:
Q  166 ggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||||  | |||||| |||||  ||||| |||  ||||||||||  ||||||||||||||||||||||| ||||||||    
T  41774727 ggggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagagtttactc 41774644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 8479738 - 8479652
Alignment:
Q  163 ttgggggag-tttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttact 248  Q
    ||||||||| ||||| || |||| |||||||| ||| | ||| |||||||| ||  |||||||||||||||||||||||| ||||||    
T  8479738 ttgggggaggtttttggtgcgttgtattgatccaggaacgtggctgatagcaagatacactttcagggacccaaatgaggatttact 8479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 41780271 - 41780314
Alignment:
Q  206 tgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    ||||||||||  |||||||||| |||||||||||||||||||||    
T  41780271 tgatagcgaggtacactttcagagacccaaatgagggtttactc 41780314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 23545329 - 23545406
Alignment:
Q  168 ggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggttt 245  Q
    ||||||||| ||||||||| |||||  || || ||| |||||||| ||  ||||||||| |||| |||||||||||||    
T  23545329 ggagtttttggttcgttttcttgattcagagacgtgtctgatagcaaggtacactttcaaggactcaaatgagggttt 23545406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 8479891 - 8479843
Alignment:
Q  52 agaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 100  Q
    ||||||||||||||| ||||| |||  | ||||||||||||||||||||    
T  8479891 agaagatgaaggcaggaacataattctgatcattttggtccctcgtcta 8479843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 31409585 - 31409538
Alignment:
Q  47 attgaagaagatgaaggcagaaacatgattgcggtcattttggtccctc 95  Q
    |||||||||||||||||||| ||||| |||| |||||||||| ||||||    
T  31409585 attgaagaagatgaaggcag-aacataattgtggtcattttgatccctc 31409538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 41739869 - 41739622
Alignment:
Q  1 tgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 100  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||  ||||||||| |||||| ||||    
T  41739869 tgagtagtgttggagaagatgaa-ggaattgggggcattgaagaagattgaaaaagatgatggcagaaacatgattgttgtcattttgatccctcatcta 41739771  T
Q  101 tgagtataacggagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggat 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  41739770 tgagtataacagagttaacaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcgtttcattgatctagggat 41739671  T
Q  201 gtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  41739670 gtgcctgatagcgagcaatactttcaggaacccaaatgagggtttactc 41739622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 42537799 - 42537718
Alignment:
Q  166 ggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttac 247  Q
    ||||||||||| |||||||| ||||||  |||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  42537799 ggggagtttttggttcgtttcattgattcagggatgtacctgatagcgagcaacactttcagggacccaactgagggtttac 42537718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 45291932 - 45292014
Alignment:
Q  167 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||| ||||| ||  |||||  |||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  45291932 gggagtttttggttcgattccttgattcagggatgtgcctgatagcgaggtacactttcagggacccaaatgagggtttactc 45292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 40601826 - 40601882
Alignment:
Q  192 tctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttact 248  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  40601826 tctagggatgtgcctgatagcgaggcacactttcagggacccaaatgagggtttact 40601882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 45296057 - 45296139
Alignment:
Q  167 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||| ||||| ||  |||||| | |||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  45296057 gggagtttttggttcgattccttgatccatggatgtgcctgatagcgaggtacacttttagggacccaaatgagggtttactc 45296139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 249
Target Start/End: Complemental strand, 38516702 - 38516620
Alignment:
Q  167 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||| ||| | ||  |||||| ||||||||| ||||||||||   ||||||||||||||||||||||||||||||||    
T  38516702 gggagtttttggttggattccttgatccagggatgtgtctgatagcgatgtacactttcagggacccaaatgagggtttactc 38516620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 40600763 - 40600710
Alignment:
Q  197 ggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactct 250  Q
    ||||||||||||||| |||  ||| |||||||||||||||||||||||||||||    
T  40600763 ggatgtgcctgatagagaggcacattttcagggacccaaatgagggtttactct 40600710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 25272069 - 25272106
Alignment:
Q  115 ttaacaccaagttaacgttttggatgcatttgactaac 152  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  25272069 ttaacactaagttaacgttttgaatgcatttgactaac 25272106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 33061622 - 33061554
Alignment:
Q  181 cgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||| ||| || |||||||||||||| ||||||  |||||||||  ||||||||| ||| |||||||    
T  33061622 cgttttcttgttccagggatgtgcctgacagcgaggcacactttcaaagacccaaataaggatttactc 33061554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 17864517 - 17864777
Alignment:
Q  1 tgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctcgtcta 100  Q
    ||||||| |||| |||||||||| ||||||| |  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  17864517 tgagtagtgttgaagaagatgaa-ggaattgagaacattgaagaagattgaagaagatgaaggcagaaacatgattgctgtcattttggtccctagtcta 17864615  T
Q  101 tgagtataacgg------------agttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttat 188  Q
    ||||||||| ||            | ||||||||||||||| |||||||||||||||||||||| ||| |   |||| ||||||| || ||||||||  |    
T  17864616 tgagtataatggacacatcaacacaattaacaccaagttaatgttttggatgcatttgactaacaaaatagacattgagggagttcttggttcgtttatt 17864715  T
Q  189 tgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactct 250  Q
    |||||  |||||||| |||||||||||   |||||||| ||| |||||||||||||||||||    
T  17864716 tgatccggggatgtggctgatagcgagatgcactttcaaggaaccaaatgagggtttactct 17864777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 17863591 - 17863466
Alignment:
Q  124 agttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactt 223  Q
    |||||||||||||||||||||||||| ||| ||||   ||||| ||||||||| |||  ||| ||||||| | ||||||| |||||||||||   |||||    
T  17863591 agttaacgttttggatgcatttgactgacggaacatacattggaggagtttttggtttatttaattgatccaaggatgtggctgatagcgaggtgcactt 17863492  T
Q  224 tcagggacccaaatgagggtttactc 249  Q
    ||||||||||||||||||||||||||    
T  17863491 tcagggacccaaatgagggtttactc 17863466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 250
Target Start/End: Complemental strand, 3870902 - 3870767
Alignment:
Q  115 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 214  Q
    ||||||| || ||||||||||||| | | |||||||||| |||||  |||||||||||||||  |||| || ||||||||||||| ||| ||||||||||    
T  3870902 ttaacacgaacttaacgttttggacgaaattgactaacggaacaactattgggggagtttttgattcgcttaattgatctagggacgtggctgatagcga 3870803  T
Q  215 gcaacactttcagggacccaaatgagggtttactct 250  Q
        || |||||||||||||| ||||||||||||||    
T  3870802 aatgcattttcagggacccaagtgagggtttactct 3870767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 114 - 249
Target Start/End: Original strand, 32565560 - 32565695
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    ||||||| |||||||||||||||||||||||||||||||  |||    |||||||||||||||  ||| ||  ||||||| |||||   | |||||||||    
T  32565560 gttaacatcaagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttgattcattaaattgatcgagggactggtctgatagcg 32565659  T
Q  214 agcaacactttcagggacccaaatgagggtttactc 249  Q
    ||  ||||||||||||||| ||| ||||||||||||    
T  32565660 agggacactttcagggacctaaacgagggtttactc 32565695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 248
Target Start/End: Original strand, 3872215 - 3872346
Alignment:
Q  117 aacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagc 216  Q
    |||| ||| ||||||||||||| | | |||||||||| || ||  |||| | |||||||| |||||||| ||||||  ||||| ||| |||||||||||     
T  3872215 aacaacaacttaacgttttggacgaaattgactaacggaataaccattgagagagtttttggttcgtttaattgatacagggacgtggctgatagcgagg 3872314  T
Q  217 aacactttcagggacccaaatgagggtttact 248  Q
      |||||||||||||||||| |||||||||||    
T  3872315 tgcactttcagggacccaaacgagggtttact 3872346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 12887715 - 12887786
Alignment:
Q  178 gttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    ||||| ||| |||||| |||||| || ||||| |||||  ||||||||||||||||||||||||||||||||    
T  12887715 gttcgatttcttgatccagggatatgtctgatcgcgaggtacactttcagggacccaaatgagggtttactc 12887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 5005789 - 5005708
Alignment:
Q  168 ggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||  | |||||| |||||  ||||| |||  ||||||||||  ||||||||||||||||||||||||||||||||    
T  5005789 ggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 5005708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 252
Target Start/End: Complemental strand, 32564641 - 32564504
Alignment:
Q  115 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 214  Q
    |||||||||||||||||||||||||  | |||||| | | ||| |  |||| ||||||||||| |   || | |||||| |||||   | ||||||||||    
T  32564641 ttaacaccaagttaacgttttggattaaattgactgatggaactaacattgagggagtttttaataatttatgttgatcgagggactggtctgatagcga 32564542  T
Q  215 gcaacactttcagggacccaaatgagggtttactctta 252  Q
    |  ||||||||| ||||||||||||||||||| |||||    
T  32564541 gggacactttcaaggacccaaatgagggtttattctta 32564504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 5014842 - 5014885
Alignment:
Q  206 tgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    
T  5014842 tgatagcgaggtacactttcagggacccaaatgagggtttactc 5014885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 249
Target Start/End: Complemental strand, 37241113 - 37241028
Alignment:
Q  164 tgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    ||||||||||||| || ||||| ||||||| | | | ||| |||||||||||  ||||||||||| ||||||| |||| |||||||    
T  37241113 tgggggagtttttggtgcgtttcattgatccaagaacgtgactgatagcgagatacactttcaggaacccaaacgaggatttactc 37241028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 12888239 - 12888305
Alignment:
Q  183 ttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||| ||||||| |||| ||| |||||||||||  ||| |||||||||| ||||||||| |||||||    
T  12888239 ttttcttgatcttgggacgtgtctgatagcgaggtacaatttcagggactcaaatgaggatttactc 12888305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 4753663 - 4753526
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||||   |||| ||||||||||  ||| ||| ||||||| |||||   | |||||||||    
T  4753663 gttaacaccaagttaacgttttggatgcatttgactaacaaaacatacattgagggagtttttgattcatttaattgatccagggactggtctgatagcg 4753564  T
Q  214 agcaacactttcagggacccaaatgagggtttactctt 251  Q
    ||  ||||||||||||||||||| ||||||||||||||    
T  4753563 agagacactttcagggacccaaacgagggtttactctt 4753526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 31622039 - 31622167
Alignment:
Q  122 caagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacac 221  Q
    ||||||||||||||||||||||||||| |||| |||||  |||| |||||||||||||| ||||| |||||  ||||| |||  ||||| ||||  ||||    
T  31622039 caagttaacgttttggatgcatttgacaaacggaacaaacattgagggagtttttagtttgttttcttgattcagggacgtggttgataacgaggtacac 31622138  T
Q  222 tttcagggacccaaatgagggtttactct 250  Q
    |||||||||||||||| ||||||||||||    
T  31622139 tttcagggacccaaataagggtttactct 31622167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 36669089 - 36669217
Alignment:
Q  122 caagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacac 221  Q
    |||||||||||||||||||||||||||||||  ||||   |||| |||||||||||||| ||||| |||||  ||||| ||| |||||||||||   |||    
T  36669089 caagttaacgttttggatgcatttgactaacagaacagacattgagggagtttttagtttgttttcttgattcagggacgtggctgatagcgaggtgcac 36669188  T
Q  222 tttcagggacccaaatgagggtttactct 250  Q
    ||||| ||| |||||| ||||||||||||    
T  36669189 tttcatggatccaaattagggtttactct 36669217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 113 - 249
Target Start/End: Original strand, 40894796 - 40894932
Alignment:
Q  113 agttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagc 212  Q
    ||||||| || ||||||||||||||| |    ||||||||| || |   |||||||||||||||||||||||| ||||||| ||||| || |||||||||    
T  40894796 agttaacgcccagttaacgttttggacgtgaatgactaacggaaaagacattgggggagtttttagttcgtttcattgatccagggacgtacctgatagc 40894895  T
Q  213 gagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||  ||||||| ||||| ||||||||||||||||||    
T  40894896 gaggtacacttttagggatccaaatgagggtttactc 40894932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 246
Target Start/End: Original strand, 4755036 - 4755094
Alignment:
Q  188 ttgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggttta 246  Q
    |||||||||||| ||| |||||||||||  |||||||||| ||||||||||||||||||    
T  4755036 ttgatctagggacgtgtctgatagcgagggacactttcagagacccaaatgagggttta 4755094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 249
Target Start/End: Complemental strand, 35298681 - 35298556
Alignment:
Q  124 agttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactt 223  Q
    |||||||||||||||||    |||||||||||| |    || |||||||||||  | |||||| |||||  ||||| |||  ||||||||||  ||||||    
T  35298681 agttaacgttttggatgggaatgactaacgaaagagactttcggggagttttttttgcgttttcttgattcagggacgtggttgatagcgaggtacactt 35298582  T
Q  224 tcagggacccaaatgagggtttactc 249  Q
    ||||| ||||||||||||||||||||    
T  35298581 tcaggaacccaaatgagggtttactc 35298556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 166 - 255
Target Start/End: Original strand, 35306087 - 35306176
Alignment:
Q  166 ggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactcttaaat 255  Q
    |||||||||||  |||||||| |||||  |||||  ||  ||||||||||  ||||||||||||||| ||||||||||||||||| ||||    
T  35306087 ggggagtttttttttcgttttcttgattcagggacatgtttgatagcgaggtacactttcagggacctaaatgagggtttactctaaaat 35306176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 31620605 - 31620525
Alignment:
Q  169 gagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||| ||||||||| |||||  | ||| ||  |||||||||||  |||||||||||||| |||||||||||||||||    
T  31620605 gagtttttggttcgttttcttgattcaaggacgtatctgatagcgaggtacactttcagggactcaaatgagggtttactc 31620525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 254
Target Start/End: Complemental strand, 36666306 - 36666196
Alignment:
Q  145 tgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagg-gacccaaatgagggt 243  Q
    ||||||||| ||||   |||| || ||||||||||||||||| |||||  ||  ||||| || || |||||  ||||||||| | ||||||||| |||||    
T  36666306 tgactaacggaacagacattgaggaagtttttagttcgttttcttgattcagaaatgtgtctaattgcgaggtacactttcaagtgacccaaataagggt 36666207  T
Q  244 ttactcttaaa 254  Q
    |||||||||||    
T  36666206 ttactcttaaa 36666196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 31621130 - 31621175
Alignment:
Q  206 tgatagcgagcaacactttcagggacccaaatgagggtttactctt 251  Q
    ||||||||||  ||||||| |||||||||||||| |||||||||||    
T  31621130 tgatagcgaggtacacttttagggacccaaatgaaggtttactctt 31621175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 37464967 - 37465050
Alignment:
Q  167 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactct 250  Q
    |||||||||| ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  37464967 gggagtttttggtttgtttcattgatctagggatgtacctgatagcgagcaacactttcagggacccaaattagggtttactct 37465050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 112 - 249
Target Start/End: Complemental strand, 9099697 - 9099560
Alignment:
Q  112 gagttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatag 211  Q
    |||||||||| ||||||||||||||||   |||||||||||| ||| |  ||||   |||||||| |||||||| ||||||  |||||||||| ||||||    
T  9099697 gagttaacactaagttaacgttttggacttatttgactaacggaaccaacattgaaagagtttttggttcgtttcattgattcagggatgtgcttgatag 9099598  T
Q  212 cgagcaacactttcagggacccaaatgagggtttactc 249  Q
    ||||  ||||||| ||||||||||||||||||||||||    
T  9099597 cgaggtacactttaagggacccaaatgagggtttactc 9099560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 19801919 - 19801786
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    |||||||| |||||||||||||||||  ||||||||||| || ||| |  ||||||||||||| |||||||| ||||||||| ||| ||  |||||||||    
T  19801919 gttaacacaaagttaacgttttggataaatttgactaacaaatcaaaa--tgggggagtttttggttcgtttaattgatctaaggacgtagctgatagcg 19801822  T
Q  214 agcaacactttcagggacccaaatgagggtttactc 249  Q
    ||  |||||||||||||||  |||||||||||||||    
T  19801821 aggtacactttcagggaccggaatgagggtttactc 19801786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 249
Target Start/End: Complemental strand, 20997757 - 20997633
Alignment:
Q  125 gttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacacttt 224  Q
    ||||||||||||||   |||||||||||||||| |  ||||  ||||||||| ||| ||||||||||||  ||||||||| ||||||||||  ||| |||    
T  20997757 gttaacgttttggacttatttgactaacgaaaccaacattgaaggagtttttggtttgttttattgatcctgggatgtgcttgatagcgaggtacatttt 20997658  T
Q  225 cagggacccaaatgagggtttactc 249  Q
    |||||||||||||||||||||||||    
T  20997657 cagggacccaaatgagggtttactc 20997633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 114 - 249
Target Start/End: Complemental strand, 36163518 - 36163383
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    |||||||||||||||||||||||||||||||||||||||  |||    |||||||||||||||  ||| ||  ||||||  ||||||  | |||||||||    
T  36163518 gttaacaccaagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttgattcattaaattgattgagggattggtctgatagcg 36163419  T
Q  214 agcaacactttcagggacccaaatgagggtttactc 249  Q
    ||  ||||||||||||| |||||||| |||||||||    
T  36163418 agggacactttcagggatccaaatgaaggtttactc 36163383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 255
Target Start/End: Original strand, 36164503 - 36164643
Alignment:
Q  115 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 214  Q
    |||||||||||||||||||||||||  | |||||||||| ||| |  |||| | ||||||||| |   || | |||||| |||||   | ||||||||||    
T  36164503 ttaacaccaagttaacgttttggattaaattgactaacggaactaacattgagagagtttttaataatttctgttgatcgagggactggtctgatagcga 36164602  T
Q  215 gcaacactttcagggacccaaatgagggtttactcttaaat 255  Q
    |  ||||||||||||||||||||||||||||||||||||||    
T  36164603 gggacactttcagggacccaaatgagggtttactcttaaat 36164643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 248
Target Start/End: Complemental strand, 37463814 - 37463680
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    ||||||||||||||||||||||||| | |  ||||||| | || |   ||| |  |||||||| | |||||| ||||||| ||||| |||| ||||||||    
T  37463814 gttaacaccaagttaacgttttggacgtaaatgactaatggaagagacattagatgagtttttggatcgtttcattgatccagggacgtgcttgatagcg 37463715  T
Q  214 agcaacactttcagggacccaaatgagggtttact 248  Q
    || |||||||||||| ||||||  |||||||||||    
T  37463714 agaaacactttcaggaacccaagcgagggtttact 37463680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 11137999 - 11137912
Alignment:
Q  162 attgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||| |||||||||| |||||||||  ||||| ||||||||| |||||||||||  ||| ||| || || ||||||||||||||||||    
T  11137999 attgagggagtttttggttcgttttcatgatccagggatgtgtctgatagcgaggtacatttttagagaaccaaatgagggtttactc 11137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 47 - 95
Target Start/End: Complemental strand, 19801995 - 19801947
Alignment:
Q  47 attgaagaagatgaaggcagaaacatgattgcggtcattttggtccctc 95  Q
    |||||||||| ||||||||||||||| |||| |||||||||||||||||    
T  19801995 attgaagaagttgaaggcagaaacataattgtggtcattttggtccctc 19801947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 18939847 - 18939915
Alignment:
Q  181 cgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||| ||||  |||||| |||  |||||||||   ||||||||||||||||||||||||||||||||    
T  18939847 cgttttcttgacttagggacgtggttgatagcgaagtacactttcagggacccaaatgagggtttactc 18939915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 18912579 - 18912548
Alignment:
Q  218 acactttcagggacccaaatgagggtttactc 249  Q
    ||||||||||||||||||||||||||||||||    
T  18912579 acactttcagggacccaaatgagggtttactc 18912548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 19802030 - 19801947
Alignment:
Q  1 tgagtagagttggagaagatgaaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgcggtcattttggtccctc 95  Q
    ||||||| | ||||||||||||| ||||||||||||||||||          |||| ||||||||||||||| |||| |||||||||||||||||    
T  19802030 tgagtagtgatggagaagatgaa-ggaattgggggcattgaa----------gaagttgaaggcagaaacataattgtggtcattttggtccctc 19801947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 151
Target Start/End: Complemental strand, 20884353 - 20884324
Alignment:
Q  122 caagttaacgttttggatgcatttgactaa 151  Q
    ||||||||||||||||||||||||||||||    
T  20884353 caagttaacgttttggatgcatttgactaa 20884324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 254
Target Start/End: Original strand, 18192932 - 18193071
Alignment:
Q  115 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 214  Q
    |||||||||||||||||||||||||  | |||||||||  ||| |  |||| ||||||||||| |   || | |||||| |||||   ||||||||||||    
T  18192932 ttaacaccaagttaacgttttggattaaattgactaacagaactaacattgagggagtttttaataatttatgttgatcgagggactggcctgatagcga 18193031  T
Q  215 gcaacactttcagggacccaaatgagggtttactcttaaa 254  Q
    |  |||||||||||||||||||||||||||||||||||||    
T  18193032 gggacactttcagggacccaaatgagggtttactcttaaa 18193071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 249
Target Start/End: Complemental strand, 18191880 - 18191746
Alignment:
Q  115 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 214  Q
    |||| |||||||||||||||||||||||||||||||||  ||||   |||||||||||||||  ||| ||  ||||||  |||||   | |||||||||     
T  18191880 ttaataccaagttaacgttttggatgcatttgactaacataacatacattgggggagtttttgattcattaaattgattgagggactggtctgatagcgt 18191781  T
Q  215 gcaacactttcagggacccaaatgagggtttactc 249  Q
    |  ||||||||||||||||||||||||||||||||    
T  18191780 gggacactttcagggacccaaatgagggtttactc 18191746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 9448745 - 9448829
Alignment:
Q  167 gggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 251  Q
    |||||||||| ||||| ||  |||||| ||||||||| |||||||||||  ||||||||||||||||||||||||||||||||||    
T  9448745 gggagtttttggttcgattccttgatccagggatgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactctt 9448829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 30758798 - 30758934
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcg 213  Q
    |||||||||||||||| |||||||||||||||||||||| |||||   |||| ||||||||||  |||  |||||||||| |  || | |  ||| ||||    
T  30758798 gttaacaccaagttaatgttttggatgcatttgactaacaaaacatacattgagggagtttttgattcaatttattgatcaaatgacgggtgtgacagcg 30758897  T
Q  214 agcaacactttcagggacccaaatgagggtttactct 250  Q
    ||  ||||||||| |||||||||||||||||||||||    
T  30758898 agggacactttcaaggacccaaatgagggtttactct 30758934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 249
Target Start/End: Original strand, 11020315 - 11020449
Alignment:
Q  115 ttaacaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttagttcgttttattgatctagggatgtgcctgatagcga 214  Q
    |||||||||||||||| ||||||||  | |||||||| | ||| |  |||| ||||||||||| |   || | |||||| ||||||  | ||||||||||    
T  11020315 ttaacaccaagttaacattttggattaaattgactaatggaactaacattgagggagtttttaataatttctgttgatcgagggattggtctgatagcga 11020414  T
Q  215 gcaacactttcagggacccaaatgagggtttactc 249  Q
    |  ||||||||||||||||||||||||||||||||    
T  11020415 gggacactttcagggacccaaatgagggtttactc 11020449  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 251
Target Start/End: Complemental strand, 226173 - 226119
Alignment:
Q  197 ggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactctt 251  Q
    |||||||||||||||||||  ||||||||| ||||||||||||||||||||||||    
T  226173 ggatgtgcctgatagcgaggcacactttcaaggacccaaatgagggtttactctt 226119  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 227233 - 227285
Alignment:
Q  197 ggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||| |||| |||  |||||||||| |||||||||||||||||||||    
T  227233 ggatgtgcctaatagtgagacacactttcagagacccaaatgagggtttactc 227285  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 21396429 - 21396392
Alignment:
Q  114 gttaacaccaagttaacgttttggatgcatttgactaa 151  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  21396429 gttaacaccaagttagcgttttggatgtatttgactaa 21396392  T

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Target: scaffold0115 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 6055 - 6141
Alignment:
Q  163 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||||||| || ||||| ||| ||||||||| | | |||||||||||  |||||||||||||| |||||||||||||||||    
T  6055 ttgggggagtttttggtgcgtttcattaatctagggacggggctgatagcgaggtacactttcagggactcaaatgagggtttactc 6141  T

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Target: scaffold0115; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 13795 - 13881
Alignment:
Q  163 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||||||| || ||||| ||| ||||||||| | | |||||||||||  |||||||||||||| |||||||||||||||||    
T  13795 ttgggggagtttttggtgcgtttcattaatctagggacggggctgatagcgaggtacactttcagggactcaaatgagggtttactc 13881  T

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Target: scaffold0115; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 4422 - 4336
Alignment:
Q  163 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||||||| || ||||| ||||||||||||| ||| ||||||||||   ||||||| ||||| ||||| ||||||||||||    
T  4422 ttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacacttttagggatccaaacgagggtttactc 4336  T

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Target: scaffold0115; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 12162 - 12076
Alignment:
Q  163 ttgggggagtttttagttcgttttattgatctagggatgtgcctgatagcgagcaacactttcagggacccaaatgagggtttactc 249  Q
    |||||||||||||| || ||||| ||||||||||||| ||| ||||||||||   ||||||| ||||| ||||| ||||||||||||    
T  12162 ttgggggagtttttggtgcgtttcattgatctagggacgtggctgatagcgatatacacttttagggatccaaacgagggtttactc 12076  T

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