View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2314_low_22 (Length: 249)

Name: NF2314_low_22
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2314_low_22
NF2314_low_22
[»] chr8 (1 HSPs)
chr8 (30-230)||(22816565-22816764)
[»] chr4 (3 HSPs)
chr4 (1-54)||(28969378-28969431)
chr4 (14-55)||(40458905-40458946)
chr4 (5-54)||(41868570-41868618)
[»] chr5 (3 HSPs)
chr5 (14-189)||(38000709-38000885)
chr5 (1-55)||(4558170-4558223)
chr5 (1-71)||(536713-536783)
[»] chr1 (4 HSPs)
chr1 (1-55)||(35762249-35762303)
chr1 (1-52)||(9537551-9537602)
chr1 (12-55)||(43407964-43408007)
chr1 (14-55)||(338059-338100)
[»] chr3 (4 HSPs)
chr3 (1-72)||(11968077-11968147)
chr3 (1-72)||(46404759-46404831)
chr3 (1-54)||(5004917-5004970)
chr3 (12-55)||(7337291-7337334)
[»] chr7 (8 HSPs)
chr7 (5-55)||(48654429-48654479)
chr7 (1-54)||(48576332-48576385)
chr7 (1-56)||(22077631-22077686)
chr7 (1-71)||(15874134-15874204)
chr7 (1-45)||(21491695-21491739)
chr7 (12-55)||(10289388-10289431)
chr7 (1-55)||(18367523-18367577)
chr7 (17-54)||(7503909-7503946)
[»] chr2 (4 HSPs)
chr2 (5-54)||(12775007-12775056)
chr2 (5-54)||(28267745-28267793)
chr2 (1-55)||(32735489-32735543)
chr2 (14-55)||(40447432-40447473)
[»] chr6 (3 HSPs)
chr6 (1-53)||(26182648-26182700)
chr6 (1-71)||(34636170-34636240)
chr6 (1-55)||(23260775-23260829)
[»] scaffold0413 (1 HSPs)
scaffold0413 (1-55)||(8839-8893)


Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 22816565 - 22816764
Alignment:
Q  30 acgtatgaggaaaaagcccttacctcaaacacttttcctcctatcacactctaaggccacgaaaattaaaatcacaagggatgccaggtcaaagcttcaa 129  Q
    ||||||| |||||||||||||||||| |   |||| | ||||| |||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  22816565 acgtatggggaaaaagcccttacctcgagagctttccttcctagcacactctaaggccacaaaaattaaaatcacaggggaggccaggtcaaagcttcaa 22816664  T
Q  130 catgaataatttaggattagtattagacaaatagagcgaagaaaagaatggaattggaatggcatttcggtcaggtagtatttacgcaaatgtgactaaa 229  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22816665 catgaataatttaggattagtattagacaaatagagc-aagaaaagaatggaattggaatggcatttcggtcaggtagtacttacgcaaatgtgactaaa 22816763  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28969378 - 28969431
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacct 54  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  28969378 tcataacatcatcctagtacttagtatggacgtatgaggaaaaaacccttacct 28969431  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 40458946 - 40458905
Alignment:
Q  14 ctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    |||| ||||||||| |||||||| ||||||||||||||||||    
T  40458946 ctagcacttagtatggacgtatggggaaaaagcccttacctc 40458905  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 41868618 - 41868570
Alignment:
Q  5 aacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacct 54  Q
    |||||||||||| |||||||||| |||||||| ||||||||| |||||||    
T  41868618 aacatcatcctaatacttagtatggacgtatg-ggaaaaagcacttacct 41868570  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 189
Target Start/End: Complemental strand, 38000885 - 38000709
Alignment:
Q  14 ctagtacttagtatagacgtatgaggaaaaagcccttacctcaaacacttttcc--tcctatcacactctaaggccacgaaaattaaaatcacaagggat 111  Q
    |||| ||||||||| |||||||| ||||||| |||||||||      |||||||  ||||||||||| ||||||||||||  ||| | ||| ||||||||    
T  38000885 ctagcacttagtatggacgtatggggaaaaaacccttaccttgccagcttttccgttcctatcacacactaaggccacgaggattgatatctcaagggat 38000786  T
Q  112 gccaggtcaaa-gcttcaacatgaataatttaggattagtattagacaaatagagcgaagaaaagaatggaattggaat 189  Q
    |  |||||||| |||||||||| | || |||||||||||||||| | ||||||||  |||||||   ||||||||||||    
T  38000785 g--aggtcaaaagcttcaacatcattattttaggattagtattacaaaaatagagtaaagaaaatcgtggaattggaat 38000709  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4558170 - 4558223
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  4558170 tcataacatcatcctaatacttagtatagacgtatg-ggaaaaagcccttacctc 4558223  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 536783 - 536713
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctcaaacacttttcctcct 71  Q
    ||||||||| ||||||||||||||||   ||||||| ||||||||||||||||  | ||||||||| ||||    
T  536783 tcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcct 536713  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 35762249 - 35762303
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||    
T  35762249 tcataacataatcctagtacttagtatggacgtatggggaaaaagcccttacctc 35762303  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9537551 - 9537602
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttac 52  Q
    ||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  9537551 tcataacatcatcctagtactcagtatggacgtatgaggtaaaagcccttac 9537602  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 43407964 - 43408007
Alignment:
Q  12 tcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||    
T  43407964 tcctagcacttagtatggacgtatggggaaaaagcccttacctc 43408007  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 338100 - 338059
Alignment:
Q  14 ctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    |||| ||||||||| |||||||| ||||||||||||||||||    
T  338100 ctagcacttagtatggacgtatggggaaaaagcccttacctc 338059  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 11968077 - 11968147
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctcaaacacttttcctccta 72  Q
    ||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| |  ||||||| |||||    
T  11968077 tcataacatcatcctagtacttagtatggacgtatg-ggaaaaaacccttacctcgagaacttttcttccta 11968147  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 46404759 - 46404831
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaa-agcccttacctcaaacacttttcctccta 72  Q
    ||||||||| ||||||||||||||||   ||||||| |||||| |||||||||||||||| |||| |||||||    
T  46404759 tcataacataatcctagtacttagtaagaacgtatggggaaaaaagcccttacctcaaacgctttacctccta 46404831  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5004917 - 5004970
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacct 54  Q
    ||||||||| ||||||||||||||||   ||||||| |||||||||||||||||    
T  5004917 tcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacct 5004970  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 7337291 - 7337334
Alignment:
Q  12 tcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||    
T  7337291 tcctagcacttagtatggacgtatggggaaaaagcccttacctc 7337334  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 48654429 - 48654479
Alignment:
Q  5 aacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    ||||||||||||||||||||||| |||||||| ||||||| ||||||||||    
T  48654429 aacatcatcctagtacttagtatggacgtatggggaaaaaacccttacctc 48654479  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48576385 - 48576332
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacct 54  Q
    ||||||||| |||| |||||||||||| |||||||| |||||||||||||||||    
T  48576385 tcataacattatcccagtacttagtatggacgtatggggaaaaagcccttacct 48576332  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22077686 - 22077631
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctca 56  Q
    |||||||||||||||||||||||||||  || |||| | |||||||||||||||||    
T  22077686 tcataacatcatcctagtacttagtatgaacatatgggaaaaaagcccttacctca 22077631  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 15874134 - 15874204
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctcaaacacttttcctcct 71  Q
    ||||||||| ||||||||||||||||   ||||||| ||||||||||||||||  | ||||||||| ||||    
T  15874134 tcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcct 15874204  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21491695 - 21491739
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaag 45  Q
    ||||||||||||||||||||||||||| |||||||| | ||||||    
T  21491695 tcataacatcatcctagtacttagtatggacgtatgggaaaaaag 21491739  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 10289388 - 10289431
Alignment:
Q  12 tcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||    
T  10289388 tcctagcacttagtatggacgtatggggaaaaagcccttacctc 10289431  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 18367523 - 18367577
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    |||||||||| ||||||| |||| ||| |||||||  ||||||||||||||||||    
T  18367523 tcataacatcgtcctagttcttattatggacgtatagggaaaaagcccttacctc 18367577  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 7503946 - 7503909
Alignment:
Q  17 gtacttagtatagacgtatgaggaaaaagcccttacct 54  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  7503946 gtacttagtatggacgtatggggaaaaagcccttacct 7503909  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 12775007 - 12775056
Alignment:
Q  5 aacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacct 54  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||||||    
T  12775007 aacatcatcctagtactttgtatggacgtatggggaaaaagcccttacct 12775056  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 28267745 - 28267793
Alignment:
Q  5 aacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacct 54  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||||    
T  28267745 aacatcatcctagtacttagtatggacgtatg-ggaaaaaacccttacct 28267793  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32735489 - 32735543
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    ||||||||| ||||||| ||||||||   ||||||| ||||||||||||||||||    
T  32735489 tcataacataatcctagcacttagtaagaacgtatggggaaaaagcccttacctc 32735543  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 40447473 - 40447432
Alignment:
Q  14 ctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    |||| ||||||||| |||||||| ||||||||||||||||||    
T  40447473 ctagcacttagtatggacgtatggggaaaaagcccttacctc 40447432  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26182648 - 26182700
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacc 53  Q
    |||||||||||||||| |||||||||| ||| |||| ||||||||||||||||    
T  26182648 tcataacatcatcctaatacttagtatggacatatggggaaaaagcccttacc 26182700  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34636240 - 34636170
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctcaaacacttttcctcct 71  Q
    ||||||||| ||||||||||||||||   ||||||| ||||||||||||||||  | ||||||||| ||||    
T  34636240 tcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacccgagacacttttcttcct 34636170  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23260775 - 23260829
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    ||||||||| |||||| |||||||||   ||||||| ||||||||||||||||||    
T  23260775 tcataacataatcctaatacttagtaagaacgtatggggaaaaagcccttacctc 23260829  T

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Target: scaffold0413 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8893 - 8839
Alignment:
Q  1 tcataacatcatcctagtacttagtatagacgtatgaggaaaaagcccttacctc 55  Q
    ||||||||| ||||||||||||||||   ||||||| ||||||||||||||||||    
T  8893 tcataacataatcctagtacttagtaagaacgtatggggaaaaagcccttacctc 8839  T

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