View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_low_27 (Length: 234)
Name: NF2314_low_27
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 15 - 215
Target Start/End: Original strand, 3562912 - 3563112
Alignment:
| Q |
15 |
atgaatagggttgctaattgctctaatttttatgggctacaaaatatgcaatattcaactcatctttttgaagaggataatgtggaccaaattgaatgtg |
114 |
Q |
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| T |
3562912 |
atgaatagggttgctaattgctctaatttttatgggctacaaaatatgcaatattcaactcaactttttgaagaggataatgtggaccaaattgaatgtg |
3563011 |
T |
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| Q |
115 |
aagataccttttctaatcattcaatcctttggaattggaatttttgattcacatgcatatatgatatacatagttgttttcaaatttgtgtattaaataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3563012 |
aagataccttttctaatcattcaatcctttggaattggaatttttgattcacatgcatatatgatatacatagttgttttcaaatttgtgtattaaataa |
3563111 |
T |
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| Q |
215 |
t |
215 |
Q |
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| T |
3563112 |
t |
3563112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 3574306 - 3574461
Alignment:
| Q |
15 |
atgaatagggttgctaattgctctaatttttatgggctacaaaatatgcaatattcaactcatctttttgaagaggataatgtggaccaaattgaatgtg |
114 |
Q |
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|||||| |||||| |||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3574306 |
atgaatggggttgttaatgactctgatttttatgggctacaaaatatgcaatgctcaactcaactttttgaagaggataatgtggaccaaattgaatgtg |
3574405 |
T |
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| Q |
115 |
aagataccttttctaatcattcaatcctttggaattggaatttttgattcacatgc |
170 |
Q |
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| T |
3574406 |
aagatgccttttctaatcattcaatcctttggagttggaacttttgattcacatgc |
3574461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 3589476 - 3589641
Alignment:
| Q |
16 |
tgaatagggttgctaattgctctaatttttatgggctacaaaatatgcaatattcaactcatctttttgaagaggataatgtggaccaaattgaatgtga |
115 |
Q |
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||||| |||||||||||||||||||||| ||||||| | ||||||||||||| ||||| || ||| |||||||||||||||||||||||||||||||||| |
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| T |
3589476 |
tgaatggggttgctaattgctctaatttgtatgggcaagaaaatatgcaatactcaacacaacttgttgaagaggataatgtggaccaaattgaatgtga |
3589575 |
T |
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| Q |
116 |
agataccttttctaatcattcaatcctttggaattggaatttttgattcacatgcatatatgatat |
181 |
Q |
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|||||| |||||| |||||||| ||||||||| |||||| ||||||||||||||||||||| |||| |
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| T |
3589576 |
agatactttttctgatcattcattcctttggagttggaacttttgattcacatgcatatatcatat |
3589641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 3551753 - 3551918
Alignment:
| Q |
15 |
atgaatagggttgctaattgctctaatttttatgggctacaaaatatgcaatattcaactcatctttttgaagaggataatgtggaccaaattgaatgtg |
114 |
Q |
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|||||| | ||||||||| ||||| ||||||||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
3551753 |
atgaatggagttgctaatggctctgatttttatgggctgcaaaatatgcaatactcaactccaccctttgaagaggataatgtggaccaaattgaatgtg |
3551852 |
T |
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| Q |
115 |
aagataccttttctaatcattcaatcctttggaattggaatttttgattcacatgcatatatgata |
180 |
Q |
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||||||| ||| |||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |
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| T |
3551853 |
aagatacttttactaatcattcaaccctttggaattggaacttttgattcaattgcatatatgata |
3551918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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