View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2314_low_29 (Length: 226)

Name: NF2314_low_29
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2314_low_29
NF2314_low_29
[»] chr4 (25 HSPs)
chr4 (69-226)||(9680651-9680808)
chr4 (115-207)||(27721716-27721808)
chr4 (126-205)||(29263371-29263450)
chr4 (81-206)||(21157768-21157893)
chr4 (98-196)||(23819099-23819197)
chr4 (96-196)||(4798526-4798626)
chr4 (96-196)||(21043195-21043295)
chr4 (138-206)||(53673660-53673728)
chr4 (119-206)||(1137712-1137799)
chr4 (115-206)||(2996573-2996664)
chr4 (119-206)||(37864335-37864422)
chr4 (119-196)||(4471178-4471255)
chr4 (121-206)||(43824283-43824368)
chr4 (105-206)||(52754600-52754700)
chr4 (139-190)||(5131253-5131304)
chr4 (135-206)||(7694009-7694080)
chr4 (126-161)||(19304971-19305006)
chr4 (125-204)||(30066755-30066834)
chr4 (96-159)||(41097216-41097279)
chr4 (126-205)||(52746830-52746909)
chr4 (96-161)||(4071923-4071988)
chr4 (103-196)||(18011881-18011974)
chr4 (107-192)||(19429723-19429808)
chr4 (98-138)||(13126537-13126577)
chr4 (117-161)||(29467605-29467649)
[»] chr6 (33 HSPs)
chr6 (92-205)||(32975979-32976092)
chr6 (117-207)||(32386087-32386177)
chr6 (92-206)||(281804-281918)
chr6 (112-206)||(4006714-4006808)
chr6 (80-161)||(2732191-2732272)
chr6 (96-161)||(3775088-3775153)
chr6 (105-206)||(8183145-8183246)
chr6 (126-195)||(34939755-34939824)
chr6 (92-196)||(20351158-20351262)
chr6 (96-159)||(5731616-5731679)
chr6 (130-196)||(27894056-27894122)
chr6 (112-206)||(31624090-31624184)
chr6 (96-161)||(30863291-30863356)
chr6 (115-196)||(31583689-31583770)
chr6 (114-206)||(3155176-3155267)
chr6 (116-204)||(30865756-30865843)
chr6 (92-196)||(32386519-32386623)
chr6 (81-206)||(33385527-33385654)
chr6 (115-202)||(32171362-32171449)
chr6 (125-206)||(1275149-1275231)
chr6 (114-196)||(4420653-4420735)
chr6 (97-179)||(7901792-7901873)
chr6 (114-176)||(9027608-9027670)
chr6 (96-161)||(1669758-1669823)
chr6 (132-161)||(2167154-2167183)
chr6 (132-161)||(2178787-2178816)
chr6 (117-170)||(7490431-7490484)
chr6 (81-206)||(33067158-33067283)
chr6 (120-205)||(33887831-33887916)
chr6 (115-159)||(5566156-5566200)
chr6 (130-206)||(6647387-6647463)
chr6 (113-161)||(7931703-7931751)
chr6 (96-208)||(8420157-8420269)
[»] chr8 (29 HSPs)
chr8 (115-207)||(11569436-11569528)
chr8 (115-206)||(11183545-11183636)
chr8 (115-196)||(9540975-9541056)
chr8 (134-206)||(28769337-28769409)
chr8 (124-207)||(30277233-30277316)
chr8 (100-206)||(5069697-5069803)
chr8 (131-192)||(20672764-20672825)
chr8 (115-160)||(30259160-30259205)
chr8 (115-167)||(2095951-2096003)
chr8 (115-206)||(6509282-6509373)
chr8 (131-206)||(11795092-11795167)
chr8 (115-206)||(30389099-30389190)
chr8 (125-196)||(42215295-42215366)
chr8 (96-206)||(30191101-30191211)
chr8 (133-203)||(41620288-41620358)
chr8 (112-206)||(44426384-44426478)
chr8 (119-196)||(12851186-12851263)
chr8 (127-200)||(13000415-13000488)
chr8 (165-210)||(25097382-25097427)
chr8 (115-196)||(26473731-26473812)
chr8 (145-206)||(27028831-27028892)
chr8 (115-159)||(2091810-2091854)
chr8 (142-206)||(10079076-10079140)
chr8 (126-206)||(11415154-11415234)
chr8 (133-206)||(12132833-12132908)
chr8 (126-206)||(12224889-12224969)
chr8 (81-206)||(12361192-12361319)
chr8 (132-196)||(25869262-25869326)
chr8 (140-196)||(42215086-42215142)
[»] chr3 (38 HSPs)
chr3 (96-207)||(24624209-24624320)
chr3 (112-206)||(1217776-1217870)
chr3 (92-196)||(26542547-26542651)
chr3 (96-196)||(45541581-45541681)
chr3 (117-196)||(34382952-34383031)
chr3 (103-205)||(37273135-37273237)
chr3 (112-206)||(39602186-39602280)
chr3 (103-196)||(54837001-54837094)
chr3 (134-206)||(51130750-51130822)
chr3 (103-206)||(50600145-50600248)
chr3 (115-189)||(24281064-24281138)
chr3 (119-204)||(41452525-41452610)
chr3 (118-207)||(43875464-43875553)
chr3 (96-156)||(659820-659880)
chr3 (115-159)||(20192585-20192629)
chr3 (113-161)||(27290878-27290926)
chr3 (98-161)||(11039301-11039364)
chr3 (104-206)||(21367667-21367770)
chr3 (96-206)||(25182947-25183058)
chr3 (92-206)||(2923478-2923592)
chr3 (128-206)||(20502060-20502138)
chr3 (130-196)||(24785215-24785281)
chr3 (126-192)||(36200110-36200176)
chr3 (115-205)||(41633361-41633451)
chr3 (81-206)||(41724211-41724337)
chr3 (115-161)||(42817201-42817247)
chr3 (96-206)||(43115056-43115166)
chr3 (126-196)||(54180770-54180840)
chr3 (141-206)||(2719468-2719533)
chr3 (134-207)||(20669171-20669244)
chr3 (120-196)||(25453842-25453919)
chr3 (117-206)||(31710868-31710957)
chr3 (117-206)||(31711123-31711212)
chr3 (115-159)||(3015822-3015866)
chr3 (115-196)||(16790356-16790438)
chr3 (126-206)||(23785255-23785335)
chr3 (140-192)||(25185999-25186051)
chr3 (117-161)||(31010447-31010491)
[»] chr5 (37 HSPs)
chr5 (103-188)||(8177499-8177584)
chr5 (115-206)||(14295506-14295597)
chr5 (112-206)||(41957427-41957521)
chr5 (115-204)||(13604828-13604917)
chr5 (131-207)||(18543192-18543267)
chr5 (119-206)||(11707055-11707142)
chr5 (126-192)||(13605363-13605429)
chr5 (116-197)||(5531044-5531124)
chr5 (103-206)||(2568658-2568761)
chr5 (95-206)||(6587066-6587177)
chr5 (81-196)||(37611160-37611275)
chr5 (81-196)||(37787890-37788005)
chr5 (109-206)||(8651325-8651422)
chr5 (92-158)||(13781831-13781897)
chr5 (112-206)||(16889735-16889829)
chr5 (114-192)||(18700399-18700476)
chr5 (140-206)||(30217082-30217148)
chr5 (115-156)||(26516457-26516498)
chr5 (118-206)||(10272413-10272501)
chr5 (120-196)||(40205058-40205134)
chr5 (133-176)||(6109513-6109556)
chr5 (125-184)||(14331389-14331448)
chr5 (103-161)||(1899199-1899256)
chr5 (145-207)||(3237092-3237154)
chr5 (96-158)||(10907426-10907488)
chr5 (103-161)||(12521573-12521631)
chr5 (140-206)||(15074753-15074819)
chr5 (118-204)||(21768179-21768265)
chr5 (106-192)||(36774677-36774763)
chr5 (172-206)||(40335907-40335941)
chr5 (141-206)||(7319013-7319078)
chr5 (141-206)||(18906342-18906407)
chr5 (98-159)||(39248146-39248207)
chr5 (115-159)||(1019445-1019489)
chr5 (145-205)||(4014433-4014493)
chr5 (96-156)||(11457148-11457208)
chr5 (115-159)||(29363055-29363099)
[»] chr7 (26 HSPs)
chr7 (95-206)||(4966156-4966267)
chr7 (96-191)||(33894642-33894737)
chr7 (107-206)||(9038112-9038210)
chr7 (98-196)||(28691798-28691895)
chr7 (115-188)||(46082054-46082127)
chr7 (115-192)||(47134736-47134813)
chr7 (90-161)||(34950105-34950176)
chr7 (140-206)||(24363605-24363671)
chr7 (133-204)||(9423591-9423662)
chr7 (119-207)||(18749800-18749888)
chr7 (96-160)||(20553149-20553213)
chr7 (103-207)||(39334192-39334296)
chr7 (95-207)||(39345470-39345582)
chr7 (121-196)||(25596043-25596118)
chr7 (98-161)||(48157082-48157145)
chr7 (124-206)||(425812-425894)
chr7 (148-206)||(514767-514825)
chr7 (98-196)||(5276241-5276339)
chr7 (115-196)||(30496714-30496796)
chr7 (119-161)||(40251987-40252029)
chr7 (140-206)||(44821959-44822025)
chr7 (119-156)||(1914465-1914502)
chr7 (165-206)||(30723068-30723109)
chr7 (133-206)||(44151477-44151550)
chr7 (115-159)||(6857318-6857362)
chr7 (97-161)||(12242289-12242353)
[»] chr1 (45 HSPs)
chr1 (126-192)||(28689442-28689508)
chr1 (126-207)||(27140477-27140558)
chr1 (113-207)||(11639393-11639487)
chr1 (116-206)||(25479581-25479671)
chr1 (115-196)||(7262497-7262578)
chr1 (96-161)||(38170650-38170715)
chr1 (140-196)||(6279409-6279465)
chr1 (115-206)||(44422699-44422790)
chr1 (96-206)||(4622093-4622203)
chr1 (105-195)||(26461910-26462000)
chr1 (120-206)||(34290236-34290322)
chr1 (140-206)||(39347971-39348037)
chr1 (133-206)||(4549230-4549303)
chr1 (112-161)||(27145966-27146015)
chr1 (92-161)||(46504174-46504243)
chr1 (114-206)||(7136976-7137068)
chr1 (125-205)||(10199397-10199477)
chr1 (132-188)||(15361058-15361114)
chr1 (126-206)||(21012790-21012870)
chr1 (115-207)||(39270404-39270496)
chr1 (95-190)||(44453104-44453199)
chr1 (126-161)||(15064825-15064860)
chr1 (96-159)||(17420250-17420313)
chr1 (117-196)||(27963351-27963430)
chr1 (96-159)||(32515401-32515464)
chr1 (98-161)||(38001641-38001704)
chr1 (96-159)||(44928151-44928214)
chr1 (122-161)||(45205113-45205152)
chr1 (115-157)||(6262787-6262829)
chr1 (143-205)||(47598428-47598490)
chr1 (125-206)||(6292493-6292574)
chr1 (126-187)||(11695880-11695941)
chr1 (96-161)||(15579527-15579592)
chr1 (132-196)||(19389911-19389976)
chr1 (126-195)||(26184759-26184828)
chr1 (133-206)||(35017576-35017649)
chr1 (132-193)||(46252678-46252739)
chr1 (115-203)||(4202131-4202218)
chr1 (114-206)||(6981492-6981584)
chr1 (98-138)||(10233609-10233649)
chr1 (129-161)||(12477280-12477312)
chr1 (134-206)||(14629964-14630036)
chr1 (98-190)||(28935838-28935930)
chr1 (146-206)||(34179882-34179942)
chr1 (119-159)||(35669019-35669059)
[»] chr2 (42 HSPs)
chr2 (92-161)||(44606066-44606135)
chr2 (92-206)||(5759531-5759645)
chr2 (119-196)||(8017444-8017521)
chr2 (115-207)||(11488276-11488366)
chr2 (115-196)||(35378995-35379076)
chr2 (115-206)||(9556239-9556330)
chr2 (96-206)||(18179200-18179310)
chr2 (113-202)||(33192206-33192295)
chr2 (102-206)||(29316741-29316845)
chr2 (102-206)||(32821809-32821913)
chr2 (117-196)||(34652017-34652096)
chr2 (115-196)||(43065429-43065510)
chr2 (96-161)||(5902509-5902574)
chr2 (103-176)||(11063518-11063591)
chr2 (116-161)||(30538153-30538198)
chr2 (132-205)||(43910995-43911068)
chr2 (96-161)||(44269011-44269076)
chr2 (112-196)||(9530705-9530788)
chr2 (96-160)||(18884913-18884977)
chr2 (81-205)||(40158719-40158843)
chr2 (103-158)||(9878649-9878704)
chr2 (96-159)||(13234553-13234616)
chr2 (115-170)||(32364710-32364765)
chr2 (103-157)||(757498-757552)
chr2 (119-161)||(787377-787419)
chr2 (115-173)||(1494425-1494483)
chr2 (92-206)||(10567057-10567171)
chr2 (126-195)||(17380578-17380648)
chr2 (92-158)||(28677615-28677681)
chr2 (127-196)||(1939323-1939392)
chr2 (103-196)||(3067346-3067439)
chr2 (126-159)||(7283043-7283076)
chr2 (120-193)||(12313157-12313230)
chr2 (133-206)||(15866665-15866738)
chr2 (96-193)||(35993340-35993437)
chr2 (125-206)||(42419997-42420078)
chr2 (125-206)||(42621364-42621445)
chr2 (96-161)||(43456667-43456732)
chr2 (126-206)||(10563548-10563628)
chr2 (12-44)||(38767527-38767559)
chr2 (120-196)||(41817178-41817254)
chr2 (125-205)||(44438828-44438908)
[»] scaffold0024 (1 HSPs)
scaffold0024 (81-206)||(27576-27701)
[»] scaffold0311 (1 HSPs)
scaffold0311 (83-161)||(10564-10642)
[»] scaffold0003 (1 HSPs)
scaffold0003 (126-196)||(306336-306406)
[»] scaffold0254 (1 HSPs)
scaffold0254 (132-161)||(3518-3547)
[»] scaffold0032 (1 HSPs)
scaffold0032 (98-150)||(42684-42736)


Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 69 - 226
Target Start/End: Complemental strand, 9680808 - 9680651
Alignment:
Q  69 taagttctctagtctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgtttttt 168  Q
    |||||||| ||||||||||||||||| ||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9680808 taagttctgtagtctactgagacaagcacttgtaagactgtatggaagagcatataaaaacagcttatgatatgtccataagttgttttcagcgtttttt 9680709  T
Q  169 caaaagctttccaggatagcttatgaaagcagcttatattataacttatatatgagaa 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9680708 caaaagctttccaggatagcttatgaaagcagcttatattataacttatatatgagaa 9680651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 27721808 - 27721716
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    |||||||||||||||  ||||||| || |||||||| |||||||||| | |||||  ||||| ||||||||| ||||||||| ||||||||||    
T  27721808 agagcttataaaaactacttatgacatatccataagctgttttcagcttattttcgcaagctctccaggataacttatgaaaacagcttatat 27721716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 29263450 - 29263371
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    |||||||||||||||||| ||||||||||||||||| | ||| || ||||| | ||||||||||||||||| || |||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagcttatttccacaagctctgcaggatagcttatgaaaacaacttat 29263371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 21157893 - 21157768
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttcc 180  Q
    |||||||| | ||| ||||||||||||||| ||||||||||| | ||||||||||||| || | || ||| |||||| ||| | ||| || ||||| | |    
T  21157893 tctactgacataagcacttgtaagactgtttggaagagcttacagaaacagcttatgacatttacaaaagctgtttttagcttatttccataagctcttc 21157794  T
Q  181 aggatagcttatgaaagcagcttata 206  Q
    |||||||| ||||||| || ||||||    
T  21157793 aggatagcatatgaaaacatcttata 21157768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 23819197 - 23819099
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||| |||||||| ||||||| |||  |||||||||||||| |||||||||||||||||||| | | |||  | ||||| | || ||||||||||||||    
T  23819197 ttgtgagactgtttggaagagtttaagaaaacagcttatgacatgtccataagttgttttcatcttatttctataagctcttcaagatagcttatgaaa 23819099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 4798526 - 4798626
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||| |||||||| ||||||||||||  |||| |||| ||| |||| |||||| |||||| ||| | ||| || ||||| |||| |||||||||||||    
T  4798526 acttgtgagactgttaggaagagcttatggaaacggcttctgacatgtacataagctgttttgagcttatttgcataagctctccaagatagcttatgaa 4798625  T
Q  196 a 196  Q
    |    
T  4798626 a 4798626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 196
Target Start/End: Original strand, 21043195 - 21043295
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||| |||||||| || |||| ||||  ||||||||||||| | || |||||| ||||||||| || |||||| | ||| | ||||||||||||||||    
T  21043195 acttgtgagactgtttgggagaggttatggaaacagcttatgacacgttcataagctgttttcagtgtattttcatatgctcttcaggatagcttatgaa 21043294  T
Q  196 a 196  Q
    |    
T  21043295 a 21043295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 53673660 - 53673728
Alignment:
Q  138 atatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||||||||||| | ||| || ||||| |||| |||||||||||||| ||| |||||    
T  53673660 atatgtccataagttgttttcagcttatttacataagctctccaagatagcttatgaaaacagtttata 53673728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 1137799 - 1137712
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| |||||| ||||||| |||| ||||||||||||||||  | ||| || ||||| ||  |||||| ||||||||||||||||||    
T  1137799 cttatgaaaacatcttatgacatgttcataagttgttttcagtttatttccataagctctcttggatagtttatgaaagcagcttata 1137712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 2996664 - 2996573
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||| |||||| ||||||| ||||||||||| | |||||| | | |||||| | ||| |||| |||||||||||||| || ||||||    
T  2996664 agagcttatgaaaacaacttatgacatgtccataagcttttttcaacttattttcatacgctctccaagatagcttatgaaaacaacttata 2996573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 37864335 - 37864422
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||||| | |||| |||||| |||||||| | | |||||| |||||| |||||| |||||| ||||  ||||||||    
T  37864335 cttataaaaacagcttattaaatgttcataagctgttttcaccttattttcacaagcttgccaggacagcttacgaaaatagcttata 37864422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 4471255 - 4471178
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||| ||||| ||||||| || |||||||||||| |||| | | |||||| ||||||| || ||||||||||||||    
T  4471255 cttatagaaacaacttatgacatatccataagttgtattcaacttattttcagaagcttttcaagatagcttatgaaa 4471178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 43824368 - 43824283
Alignment:
Q  121 tataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||  |||||||  |||| ||||||||||||||||| | ||| || ||||||||||||||| |||| ||||  ||||||||    
T  43824368 tataaaaatggcttatggcatgttcataagttgttttcagcttatttccataagctttccaggataacttacgaaaaaagcttata 43824283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 52754700 - 52754600
Alignment:
Q  105 actgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctta 204  Q
    |||||| |||||||||||| ||||||| ||||||  |||||||||| || ||||||| || ||||  ||| |||||   ||||||||||||| |||||||    
T  52754700 actgtttggaagagcttatgaaaacagtttatgacgtgtccataagctgctttcagc-ttatttcctaagatttccgaaatagcttatgaaaacagctta 52754602  T
Q  205 ta 206  Q
    ||    
T  52754601 ta 52754600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 5131253 - 5131304
Alignment:
Q  139 tatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctt 190  Q
    ||||||||||||||||||||||| | ||| || ||||| |||||||||||||    
T  5131253 tatgtccataagttgttttcagcttatttccataagctctccaggatagctt 5131304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 7694009 - 7694080
Alignment:
Q  135 atgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||| |||| ||||||||||||||||| | ||| || || || ||||||||| ||||||||| |||||||||    
T  7694009 atgacatgttcataagttgttttcagcttatttccataaactctccaggataacttatgaaaacagcttata 7694080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Complemental strand, 19305006 - 19304971
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||||| ||||||||||||||||||||||    
T  19305006 aaacagcttatgacatgtccataagttgttttcagc 19304971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 30066755 - 30066834
Alignment:
Q  125 aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctta 204  Q
    |||||||||||| |||||| |||||  |||||||||| | |||| | ||||| |||| |||||||||||| | |||||||    
T  30066755 aaaacagcttataatatgttcataatctgttttcagcttgtttttataagctctccaagatagcttatgagaacagctta 30066834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 41097216 - 41097279
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||| ||||||||||| |||||||||| ||||| || |||| ||||||||||| | ||||||    
T  41097216 acttgtgagactgttcgggagagcttatagaaacaactaatgacatgtccataagctattttca 41097279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 205
Target Start/End: Original strand, 52746830 - 52746909
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    |||||||||| || |||| |||||| ||||||||||   |||||| |||| || || |||||||||||||| ||||||||    
T  52746830 aaacagcttaagacatgttcataagctgttttcagctgattttcataagccttacaagatagcttatgaaaacagcttat 52746909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 4071988 - 4071923
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||| |||||||| |  ||||||||| ||||||||||||||| |||   |||||||||||||||    
T  4071988 acttgtgagactgtttgagagagcttatgaaaacagcttatgatttgttggtaagttgttttcagc 4071923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 196
Target Start/End: Complemental strand, 18011974 - 18011881
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||| |||||| ||||||||| |||||||||||| ||||||  |||||  ||||| ||| | |||||| || || | || ||||||||||||||    
T  18011974 agaccgttcgggagagcttatgaaaacagcttataatatgtatataagccgtttttagcttattttcataaactcttcaagatagcttatgaaa 18011881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 19429808 - 19429723
Alignment:
Q  107 tgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    |||| |||||| |||| |||||||||| || | ||  ||||||| |||||||||| | ||| || ||||| |||||||||||||||    
T  19429808 tgtttggaagatcttacaaaaacagctcattacattgccataagctgttttcagcttatttccataagctctccaggatagcttat 19429723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 13126537 - 13126577
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatga 138  Q
    |||| |||||||| |||||| ||||||||||||||||||||    
T  13126537 ttgtgagactgtttggaagaacttataaaaacagcttatga 13126577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Original strand, 29467605 - 29467649
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||||| |||| |||||||| ||||||||||| ||||||||||    
T  29467605 agcttatagaaacggcttatgacatgtccataagctgttttcagc 29467649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 205
Target Start/End: Complemental strand, 32976092 - 32975979
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctta 191  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||||| || |||||||| ||||||||||||  ||  | || | |||||||||||||||    
T  32976092 aagtacttgtgagactgtttggaagagcttatagaaacagcttatgacatttccataagctgttttcagcgtgcttctataatcattccaggatagctta 32975993  T
Q  192 tgaaagcagcttat 205  Q
    ||||| || |||||    
T  32975992 tgaaaacaacttat 32975979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 207
Target Start/End: Original strand, 32386087 - 32386177
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    |||||||  ||||||||||  | |||||||||||||||||||||| |  ||||| ||||||||||||||| || |||||| ||||||||||    
T  32386087 agcttatggaaacagcttacaacatgtccataagttgttttcagcttactttcataagctttccaggataactaatgaaaacagcttatat 32386177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 281804 - 281918
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctta 191  Q
    |||||||||| |||||||| || |||||| ||  || || ||||||| ||||| |||||||||||||||| | ||| ||  |||| || |||||||||||    
T  281804 aagtacttgtgagactgtttgggagagctaatggaagcaacttatgacatgtctataagttgttttcagcttatttccatgagctctctaggatagctta 281903  T
Q  192 tgaaagcagcttata 206  Q
    ||||  |||||||||    
T  281904 tgaacacagcttata 281918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 4006808 - 4006714
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||| | |||||| |||| |||||||||||||||| |||||||| | |||||| || || ||  ||||||||||||||| || ||||||    
T  4006808 ggaagagcttgtgaaaacaacttacgatatgtccataagttattttcagcttattttcataacctctcagggatagcttatgaaaacaacttata 4006714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 2732191 - 2732272
Alignment:
Q  80 gtctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||| | ||| |||||| |||||||| |||| |||||||  |||||||| ||||| ||||||||| |||||||||||    
T  2732191 gtctactgacataagcacttgtgagactgtttggaaaagcttatggaaacagctaatgatctgtccataaattgttttcagc 2732272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 3775088 - 3775153
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||| ||||| |||||||||||||||| ||||||||||||| |||| |||||  ||||||||||    
T  3775088 acttgtgagactattcggaagagcttatagaaacagcttatgacatgtgcataaactgttttcagc 3775153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 206
Target Start/End: Complemental strand, 8183246 - 8183145
Alignment:
Q  105 actgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctta 204  Q
    ||||||| | ||||||||| ||||||||||| || |||| |||||| |||||| ||| | |||||| |||||||| || ||||||| ||||| || ||||    
T  8183246 actgttccggagagcttatgaaaacagcttacgaaatgttcataagctgtttttagcctgttttcataagctttctagaatagcttgtgaaaacaactta 8183147  T
Q  205 ta 206  Q
    ||    
T  8183146 ta 8183145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 34939824 - 34939755
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    ||||||||||||| |||||||||| ||||||||||| | ||| || || || ||||||||||||||||||    
T  34939824 aaacagcttatgacatgtccataaattgttttcagcttatttccataaactctccaggatagcttatgaa 34939755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 20351262 - 20351158
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctta 191  Q
    |||||||||| |||||||| || | ||||||| |||| |||||| | ||||||| || |||||||||||| | |||| | ||||| |||  |||||||||    
T  20351262 aagtacttgtgagactgtttgggacagcttatgaaaatagcttacggtatgtccttatgttgttttcagcttatttttataagctatccgagatagctta 20351163  T
Q  192 tgaaa 196  Q
    |||||    
T  20351162 tgaaa 20351158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 5731679 - 5731616
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||| ||| |||| || ||||||||| |||| |||||||||||||||| |||||||||||||    
T  5731679 acttgtgagagtgtttggtagagcttatgaaaatagcttatgatatgtccgtaagttgttttca 5731616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 27894122 - 27894056
Alignment:
Q  130 agcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||||||||||||||  |||||||||| | |||||| ||||||| || |||| |||||||||    
T  27894122 agcttatgatatgtccataaactgttttcagcttattttcataagcttttcaagatatcttatgaaa 27894056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 31624184 - 31624090
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||| ||||| |||||||||||||| |||| |||||| |||||||| | | |||||| ||  | |||| |||||| ||||||| |||||||||    
T  31624184 ggaagaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataatttctccaagatagcctatgaaaacagcttata 31624090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 30863356 - 30863291
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||| ||||| || || ||||||||| |||||| ||||||| |||| |||||||||||||||||    
T  30863356 acttgttagactctttggtagagcttatgaaaacaacttatgacatgtacataagttgttttcagc 30863291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 31583770 - 31583689
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||||  |||| ||| |||| |||||||||||||||||||| | | ||| || ||||||| | |||||||||||||||    
T  31583770 agagcttatttaaaccgctaatgacatgtccataagttgttttcaacttatttccataagcttttcgggatagcttatgaaa 31583689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 3155267 - 3155176
Alignment:
Q  114 aagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||| | ||| ||||||| ||||| ||||| |||||||||| || |||| | |||| ||||||||| |||||||||  ||||||||    
T  3155267 aagagcttatatacacaacttatgacatgtctataagctgttttcagc-ttatttccatagctctccaggatatcttatgaaaatagcttata 3155176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 30865843 - 30865756
Alignment:
Q  116 gagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctta 204  Q
    |||||||| |||||||||||| | |||||||||||||||||| |   || || || ||||| |||||||||||| |||||| |||||||    
T  30865843 gagcttatgaaaacagcttatcacatgtccataagttgttttta-aattattgcagaagctctccaggatagctgatgaaaacagctta 30865756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 196
Target Start/End: Original strand, 32386519 - 32386623
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctta 191  Q
    |||||||||| |||| ||| | ||||||||||  ||| | ||||| | ||||||| || ||||||||||| | |||||| ||||| ||||||||| || |    
T  32386519 aagtacttgtgagaccgtttgaaagagcttatggaaatatcttataacatgtccacaacttgttttcagcttattttcataagctctccaggataactaa 32386618  T
Q  192 tgaaa 196  Q
    |||||    
T  32386619 tgaaa 32386623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 33385654 - 33385527
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataa--gttgttttcagcgttttttcaaaagcttt 178  Q
    |||||||| | ||| |||||| | |||||| ||||||| ||||  |||||||| |||| ||||||||||  |||||||||||| ||||| || || || |    
T  33385654 tctactgatataagcacttgtgaaactgtttggaagagtttatggaaacagctcatgacatgtccataaaagttgttttcagcttttttccataaactgt 33385555  T
Q  179 ccaggatagcttatgaaagcagcttata 206  Q
    | || | |||||||||||  ||||||||    
T  33385554 ctagaaaagcttatgaaaatagcttata 33385527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 32171362 - 32171449
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagct 202  Q
    ||||||||| |||||||||||||| | ||||| ||| | |||||||| | ||| || ||||| ||||||||| || |||||| |||||    
T  32171362 agagcttatgaaaacagcttatgacaagtccagaagctattttcagcttatttccataagctatccaggataactaatgaaaacagct 32171449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 1275231 - 1275149
Alignment:
Q  125 aaaacagcttatgatatgtccataagttg-ttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||| |||||| || |||| |||||||| | ||| || ||||| ||||||||| | ||||||| |||||||||    
T  1275231 aaaacagcttatgacatgtccttacgttgtttttcagcttatttccataagctctccaggataacatatgaaaacagcttata 1275149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 4420735 - 4420653
Alignment:
Q  114 aagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||||| |||||  |||||| |||| |||||| |||||||||| | ||| || ||||| |||| ||||||||| ||||    
T  4420735 aagagcttatagaaacaaattatgacatgttcataagctgttttcagcttatttccataagctctccaagatagcttaggaaa 4420653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 7901792 - 7901873
Alignment:
Q  97 cttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttc 179  Q
    ||||| |||||||| |||||||||||| ||| || |||| |||||||| ||||  ||||||||||   |||||||||||||||    
T  7901792 cttgtgagactgtttggaagagcttatgaaa-caacttaagatatgtctataaactgttttcagctcattttcaaaagctttc 7901873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 9027670 - 9027608
Alignment:
Q  114 aagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagct 176  Q
    ||||||||||  ||| | ||||||| |||||||||||||||||||||| | |||||| |||||    
T  9027670 aagagcttatggaaataacttatgacatgtccataagttgttttcagcttattttcataagct 9027608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 1669758 - 1669823
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||||  | || ||||||||| |||||| ||||||| ||||| ||||| ||||||||||    
T  1669758 acttgtaagactaattgggagagcttatgaaaacaacttatgacatgtctataagctgttttcagc 1669823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 2167154 - 2167183
Alignment:
Q  132 cttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||||||||||||||||||||||    
T  2167154 cttatgatatgtccataagttgttttcagc 2167183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 2178787 - 2178816
Alignment:
Q  132 cttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||||||||||||||||||||||    
T  2178787 cttatgatatgtccataagttgttttcagc 2178816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 7490431 - 7490484
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttca 170  Q
    |||||||| ||||||||||||||||||||||| |  ||||||||| ||| ||||    
T  7490431 agcttatataaacagcttatgatatgtccatatgcagttttcagcttttcttca 7490484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 33067283 - 33067158
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttcc 180  Q
    |||||||| | ||| ||||||||||||| | || |||||||||   ||||| ||| || |||||||||| | ||||||||  | |||  | ||||| |||    
T  33067283 tctactgacataagcacttgtaagactgattgggagagcttatggcaacagtttaggaaatgtccataaatcgttttcagtttatttctacaagctctcc 33067184  T
Q  181 aggatagcttatgaaagcagcttata 206  Q
    | |||||||||||||| || ||||||    
T  33067183 aagatagcttatgaaaacaacttata 33067158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 205
Target Start/End: Complemental strand, 33887916 - 33887831
Alignment:
Q  120 ttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    |||| |||| ||||||||| |||| || |||||||||||| | | ||| || |||| || ||||||||||||||||| ||| ||||    
T  33887916 ttatgaaaatagcttatgacatgttcacaagttgttttcaacttatttccataagcatttcaggatagcttatgaaaacagtttat 33887831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 5566156 - 5566200
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||| || |||||||||||| | ||||||||||||||||||||    
T  5566156 agagctaatgaaaacagcttattacatgtccataagttgttttca 5566200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 206
Target Start/End: Complemental strand, 6647463 - 6647387
Alignment:
Q  130 agcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||| |||| |||||| |||||||| | | |||||| ||||| || | |||||||||||||| ||| |||||    
T  6647463 agcttatgacatgttcataagatgttttcaacttattttcataagctctctaagatagcttatgaaaacagattata 6647387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 7931703 - 7931751
Alignment:
Q  113 gaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||| |||||| ||||||| |||| | |||||||||||||||    
T  7931703 gaagagcttatgaaaacaacttatgacatgttcttaagttgttttcagc 7931751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 8420157 - 8420269
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||| |||||||| |  |||||||||| ||| ||||||||| ||||||| ||| | |||||| | | ||| || ||||| ||||  |||||||| ||     
T  8420157 acttgtgagactgttagtgagagcttatagaaatagcttatgacatgtccacaagctattttcaacttatttccataagctctccattatagcttacgag 8420256  T
Q  196 agcagcttatatt 208  Q
    | |||||||||||    
T  8420257 aacagcttatatt 8420269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 11569436 - 11569528
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    |||||||||  ||||||||||||| |||| ||||||||||||||||| | ||||||||| || |||| |||||||||||||| ||||||||||    
T  11569436 agagcttatggaaacagcttatgacatgtacataagttgttttcagcttattttcaaaatctctccatgatagcttatgaaaacagcttatat 11569528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 11183636 - 11183545
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||| ||||||||||||| ||||| |||||||||| | ||| || ||||| |||||| |||||| ||||| |||||||||    
T  11183636 agagcttataaaaacaacttatgatatgtctataagctgttttcagcttatttccataagctctccagggtagcttgtgaaaacagcttata 11183545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 9540975 - 9541056
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||||  ||||| ||||||| |||||||||| |||| |||||| | |||||||||||| || ||||||||||||||||    
T  9540975 agagcttatggaaacatcttatgacatgtccataatttgtgttcagcttattttcaaaagctctctaggatagcttatgaaa 9541056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 28769337 - 28769409
Alignment:
Q  134 tatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||||||||||||||| | ||| || || || ||||  ||||||||||||| |||||||||    
T  28769337 tatgatatgtccataagttgttttcagcttatttccataaactctccaaaatagcttatgaaaacagcttata 28769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 207
Target Start/End: Original strand, 30277233 - 30277316
Alignment:
Q  124 aaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    ||||| |||||| || ||| |||||||||||||||||| | ||| || || || || |||||||||||||||| ||||||||||    
T  30277233 aaaaatagcttaggacatggccataagttgttttcagcttatttccataaactctctaggatagcttatgaaaacagcttatat 30277316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 5069803 - 5069697
Alignment:
Q  100 gtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagca 199  Q
    ||||||||||| |  |||||||||  ||||| ||||| | |||| |||||||  |||||||| | |||||| |||||||| | |||| ||||||||| ||    
T  5069803 gtaagactgtttgagagagcttatggaaacatcttataacatgttcataagtcattttcagcttattttcataagctttcgaagatatcttatgaaaaca 5069704  T
Q  200 gcttata 206  Q
    |||||||    
T  5069703 gcttata 5069697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 20672825 - 20672764
Alignment:
Q  131 gcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    |||||||| |||| |||||| |||||||||| | |||||| ||||| |||||||||||||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataagctctccaggatagcttat 20672764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 30259205 - 30259160
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcag 160  Q
    |||||||||  ||||||||||||||||||| |||||||||||||||    
T  30259205 agagcttatggaaacagcttatgatatgtctataagttgttttcag 30259160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 2096003 - 2095951
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttt 167  Q
    |||||||| ||||||| |||||||||||||||| || |||||||||| |||||    
T  2096003 agagcttacaaaaacaccttatgatatgtccatgagctgttttcagctttttt 2095951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 6509282 - 6509373
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaa-aagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||| ||||||||||||| ||| | ||||  | |||||| | || |||||| ||||| ||||||||||||||||||| |||||||||    
T  6509282 agagcttatagaaacagcttatgacatgcctataaactattttcacc-ttatttcaataagctctccaggatagcttatgaaaacagcttata 6509373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 206
Target Start/End: Complemental strand, 11795167 - 11795092
Alignment:
Q  131 gcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||| ||||||||||  |||||||||| | ||| || ||||| ||||  ||||||||||||| |||||||||    
T  11795167 gcttatgacatgtccataacctgttttcagcttatttccataagctctccataatagcttatgaaatcagcttata 11795092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 30389190 - 30389099
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| ||| |||| |||| |||| |||| ||||||||||||||||| | |||||| ||| | || |||| ||||||||||| |||| ||||    
T  30389190 agagcatatgaaaatagctaatgacatgttcataagttgttttcagcttattttcataagttctctaggaaagcttatgaaaacagcgtata 30389099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 42215295 - 42215366
Alignment:
Q  125 aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||||||||  ||| |||||| |||||||||| | ||| || ||||| ||||||||||| |||||||    
T  42215295 aaaacagcttatgacttgttcataagctgttttcagcttatttacataagctctccaggatagcatatgaaa 42215366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 30191101 - 30191211
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||| |||||||| || |||||||||  ||||| ||||||| |||| || || ||||||||||| | ||| || || | || ||||||||||||| ||    
T  30191101 acttgttagactgtttgggagagcttatggaaacaacttatgacatgttcaaaacttgttttcagcttatttccataaacatttcaggatagcttatcaa 30191200  T
Q  196 agcagcttata 206  Q
    |  ||||||||    
T  30191201 aatagcttata 30191211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 41620288 - 41620358
Alignment:
Q  133 ttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctt 203  Q
    |||||| ||||||||||||||||||| || | ||||||||||||   || |||||||||| ||| ||||||    
T  41620288 ttatgacatgtccataagttgttttccgcttattttcaaaagctcgacaagatagcttataaaaacagctt 41620358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 44426384 - 44426478
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||| ||||||||||||||||| ||  ||| ||||||||  ||| ||| | |||||  ||||| ||||  ||||||||||||| |||||||||    
T  44426384 ggaagaacttataaaaacagcttacgacgtgttcataagttcctttaagcttattttcgtaagctgtccacaatagcttatgaaaacagcttata 44426478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 12851263 - 12851186
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||| |||||||||||| | |||| |||||| ||||||| || | |||||| ||||| || |||| |||||||||||    
T  12851263 cttatgaaaacagcttataacatgttcataagatgttttcggcttattttcataagctctcaaggaaagcttatgaaa 12851186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 200
Target Start/End: Original strand, 13000415 - 13000488
Alignment:
Q  127 aacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcag 200  Q
    |||| ||||||| ||||||| |||||||||||||| | ||| || ||||||| || || || ||||||||||||    
T  13000415 aacaacttatgacatgtccacaagttgttttcagcttatttccataagctttgcatgacagtttatgaaagcag 13000488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 210
Target Start/End: Complemental strand, 25097427 - 25097382
Alignment:
Q  165 ttttcaaaagctttccaggatagcttatgaaagcagcttatattat 210  Q
    |||||| ||||| ||||||||||||||||||| |||||||| ||||    
T  25097427 ttttcataagctctccaggatagcttatgaaaacagcttattttat 25097382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 26473731 - 26473812
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||| |||||||||||||| ||||| ||||| |  ||| | | | |||||| ||||| || ||||||||||||||||    
T  26473731 agagcttatgaaaacagcttatgacatgtctataagctagttttaacttattttcataagctctctaggatagcttatgaaa 26473812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 27028892 - 27028831
Alignment:
Q  145 cataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||| | |||||||| | |||||| ||||| |||| |||||||||||||| |||||||||    
T  27028892 cataagctattttcagcttattttcataagctctccaagatagcttatgaaaacagcttata 27028831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 2091854 - 2091810
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||| | ||||||| |||||||||| |||||||||||||||||    
T  2091854 agagctcacaaaaacaacttatgatatatccataagttgttttca 2091810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 10079076 - 10079140
Alignment:
Q  142 gtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||| ||| | ||| || || |||||||| |||||| |||||| |||||||||    
T  10079076 gtccataagttgttttaagcttctttccataaactttccagaatagctcatgaaaacagcttata 10079140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 11415234 - 11415154
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||| | ||||||||||| | || ||||| | |||||| || || || |||||||||||||||| |||| ||||    
T  11415234 aaacagcttataacatgtccataagctattctcagcttattttcacaaactctctaggatagcttatgaaaacagcgtata 11415154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 12132908 - 12132833
Alignment:
Q  133 ttatgatatgtccataagttgttttcagcgttttttcaaaagctt--tccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||| || |||||||||||| | | |||||| ||||||   |||||||| ||||||||| |||||||||    
T  12132908 ttatgatatgtgcagaagttgttttcaacttattttcataagcttgaaccaggataacttatgaaaacagcttata 12132833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 12224889 - 12224969
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| ||||||| |||||||| |||| |||||||| | |||| |  |||| | |||||| ||||||||||| ||||||||    
T  12224889 aaacaacttatgacatgtccatcagtttttttcagcttatttttatgagctcttcaggatggcttatgaaagtagcttata 12224969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 12361319 - 12361192
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagag--cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagcttt 178  Q
    |||||||| | |||||||||| ||||| || |  ||||  |||||| ||| ||||||||| ||||||||||| |||||||| | | ||| ||  |||| |    
T  12361319 tctactgatataagtacttgttagactctttgagagagatcttatagaaatagcttatgacatgtccataagctgttttcaacttatttccattagctct 12361220  T
Q  179 ccaggatagcttatgaaagcagcttata 206  Q
    || | ||| ||||||||| |||||||||    
T  12361219 cctgaataacttatgaaaacagcttata 12361192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 25869262 - 25869326
Alignment:
Q  132 cttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||| |||||||||||||||||||||| | ||| || || || |||| |||||| |||||||    
T  25869262 cttatgacatgtccataagttgttttcagcttatttccataaactctccatgatagcctatgaaa 25869326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Original strand, 42215086 - 42215142
Alignment:
Q  140 atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||| ||||||||||||||||| | ||| || ||||| |||| ||||||||||||||    
T  42215086 atgttcataagttgttttcagcttatttacataagctctccaagatagcttatgaaa 42215142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 24624320 - 24624209
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    ||||||||||||||| |||||||||||| |||||||||||||| ||||||||||  |||||||||| | ||  || ||| |||| |||||||| ||||||    
T  24624320 acttgtaagactgtttggaagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttattaacataagatttctaggatagcctatgaa 24624221  T
Q  196 agcagcttatat 207  Q
    | || |||||||    
T  24624220 aacatcttatat 24624209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 1217776 - 1217870
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||   ||||||||||||| |||||||||||||||||||| | |  ||||| ||| | || |||||||||||||||| |||||||||    
T  1217776 ggaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttactttcataagttctcaaggatagcttatgaaaacagcttata 1217870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 196
Target Start/End: Complemental strand, 26542651 - 26542547
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctta 191  Q
    ||||||||||||||||||| |||||||||||   ||||| ||||||||||||| |||| ||||||||| | | ||| || || || ||||  ||||||||    
T  26542651 aagtacttgtaagactgtttggaagagcttactgaaacaacttatgatatgtctataacttgttttcaacttatttccataaactctccataatagctta 26542552  T
Q  192 tgaaa 196  Q
    |||||    
T  26542551 tgaaa 26542547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 45541681 - 45541581
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||||||||||||  ||||| ||||| |||||||||||||| |||| |||||| |||||||||  | || ||| ||| | |||| |||||||||||||    
T  45541681 acttgtaagactgtttagaagaacttatgaaaacagcttatgacatgttcataagctgttttcaggttattctcataagttatccaagatagcttatgaa 45541582  T
Q  196 a 196  Q
    |    
T  45541581 a 45541581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 34383031 - 34382952
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||  |||||| |||||||||||| |||||||||||||| | | |||||  ||||||| |||||||||||||||||    
T  34383031 agcttatggaaacagattatgatatgtctataagttgttttcatcttattttcttaagcttttcaggatagcttatgaaa 34382952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 205
Target Start/End: Complemental strand, 37273237 - 37273135
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagct 202  Q
    |||||||| || |||||||||  ||||| ||||||| |||||||||||||||||||| | | ||| || ||| | |||| |||||||||||||| ||| |    
T  37273237 agactgtttgggagagcttatggaaacaacttatgacatgtccataagttgttttcaacttatttccataagttctccaagatagcttatgaaaacagtt 37273138  T
Q  203 tat 205  Q
    |||    
T  37273137 tat 37273135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 39602186 - 39602280
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||| || ||||||||||| |||| ||||| ||||||||| | | |||||| ||| | || | |||||||||||||| |||||||||    
T  39602186 ggaagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataagttctcaaagatagcttatgaaaacagcttata 39602280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 54837001 - 54837094
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||| ||||||  |||| |||||||||||||| |||| ||||| |||||||| || | |||| | ||||| |||| ||||||||||||||    
T  54837001 agactgtttggaagaatttatgaaaacagcttatgacatgttcataacttgttttccgcttatttttataagctgtccaagatagcttatgaaa 54837094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 51130822 - 51130750
Alignment:
Q  134 tatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| |||||||||||||| ||||||| | ||||||| |||| |||| |||||||||||||| || ||||||    
T  51130822 tatgacatgtccataagttgctttcagcttattttcaatagctctccatgatagcttatgaaaacaccttata 51130750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 50600145 - 50600248
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagct 202  Q
    |||||||| |||||| |||||||||||| || |||| |||||||  || |||||||||| | |||||| ||| | ||||  |||||| |||||| |||||    
T  50600145 agactgtttggaagaacttataaaaacaactcatgacatgtccacgagctgttttcagcttattttcataagttctccaatatagctgatgaaaacagct 50600244  T
Q  203 tata 206  Q
    ||||    
T  50600245 tata 50600248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 189
Target Start/End: Complemental strand, 24281138 - 24281064
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagct 189  Q
    ||||||||| |||||| |||||||||| ||||||||||||||||| | |  ||||| ||||| |||| |||||||    
T  24281138 agagcttatgaaaacaacttatgatatctccataagttgttttcaacttactttcataagctctccatgatagct 24281064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 204
Target Start/End: Complemental strand, 41452610 - 41452525
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctta 204  Q
    |||||| ||||| ||||||||||||| ||||| |||||||| | | ||| || ||  | ||||||||||||||||||| |||||||    
T  41452610 cttatagaaacaacttatgatatgtctataagctgttttcaccttatttccacaacttctccaggatagcttatgaaaacagctta 41452525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 207
Target Start/End: Complemental strand, 43875553 - 43875464
Alignment:
Q  118 gcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    ||||||| ||||| ||||||||| ||||||||||||||||| |  | ||| || ||| | ||||||||||||||||| | || |||||||    
T  43875553 gcttatagaaacaacttatgatacgtccataagttgttttctgattatttccataagttctccaggatagcttatgagaacatcttatat 43875464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 659820 - 659880
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttt 156  Q
    |||||| |||||||| |  |||||| ||| ||||||||||||| |||||||||||||||||    
T  659820 acttgtgagactgtttgtgagagctaatagaaacagcttatgacatgtccataagttgttt 659880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 20192585 - 20192629
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||||    
T  20192585 agagcttatagaaacagcttatgacatgtccataagctgttttca 20192629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 27290878 - 27290926
Alignment:
Q  113 gaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||| |||||||||||||| ||| ||||||| ||||||||||    
T  27290878 gaagagcttatgaaaacagcttatgacatgcccataagctgttttcagc 27290926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 11039301 - 11039364
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||| |||||||| | ||||||||||  |||||  |||||| ||||||||||||||||||||||    
T  11039301 ttgtgagactgtttgaaagagcttatggaaacatattatgacatgtccataagttgttttcagc 11039364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 206
Target Start/End: Complemental strand, 21367770 - 21367667
Alignment:
Q  104 gactgttcggaagagcttataaaaacagcttatgatat-gtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagct 202  Q
    ||||||| || ||| ||||| |||||||||||||| || || || ||| |||||||||| | |||||| ||| | |||| |||||||||||||| || ||    
T  21367770 gactgtttgggagaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataagttctccaagatagcttatgaaaacaact 21367671  T
Q  203 tata 206  Q
    ||||    
T  21367670 tata 21367667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 25182947 - 25183058
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgtttt-cagcgttttttcaaaagctttccaggatagcttatga 194  Q
    |||||| |||||||| |  ||||||||| |||||| ||||||| || |||||||| | |||| |||| | ||| || ||  |||||| ||||||||||||    
T  25182947 acttgtgagactgtttgagagagcttatgaaaacaacttatgacatatccataagctatttttcagcatatttccacaaattttccatgatagcttatga 25183046  T
Q  195 aagcagcttata 206  Q
    || |||||||||    
T  25183047 aaacagcttata 25183058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 2923592 - 2923478
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctta 191  Q
    ||||||||| ||||||||| |||||| |||||| ||||| ||||  | ||||||||||||| |||| ||| | |||  | || || | |||  |||||||    
T  2923592 aagtacttgaaagactgtttggaagaacttatagaaacaacttactacatgtccataagttatttttagcttatttatataatctcttcagtgtagctta 2923493  T
Q  192 tgaaagcagcttata 206  Q
    ||||| |||||||||    
T  2923492 tgaaaacagcttata 2923478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 20502060 - 20502138
Alignment:
Q  128 acagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| ||||| |||||| | | ||||||||||| | || ||| ||||| | ||||||||||||||||| |||||||||    
T  20502060 acagcatatgacatgtccgtcatttgttttcagcttattctcataagctcttcaggatagcttatgaaaacagcttata 20502138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 24785281 - 24785215
Alignment:
Q  130 agcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||| |||| ||||||||||||| ||| | ||| || ||||| || ||||||||||||||||    
T  24785281 agcttatgacatgttcataagttgtttttagcttatttacataagctctcgaggatagcttatgaaa 24785215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 36200176 - 36200110
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    ||||| ||||||| |||||||||||||||||||||| | ||| ||  |||| | |||||||||||||    
T  36200176 aaacaacttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttat 36200110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 205
Target Start/End: Complemental strand, 41633451 - 41633361
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    |||| |||||||||||  | |||| ||||| |||| ||||||||||| | |||||| ||||| ||||  |||||| |||||| ||||||||    
T  41633451 agaggttataaaaacaaatcatgacatgtctataaattgttttcagcttattttcataagctctccaaaatagctgatgaaaacagcttat 41633361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 41724337 - 41724211
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgt-tttttcaaaagctttc 179  Q
    |||||||| | |||||||||| |||| ||| |  | | |||||  ||||| ||||||| |||||||||||||||||||||| | ||||  | ||||| ||    
T  41724337 tctactgacataagtacttgtcagacagtttgtgaaaacttatggaaacaacttatgacatgtccataagttgttttcagcttattttatataagctctc 41724238  T
Q  180 caggatagcttatgaaagcagcttata 206  Q
     ||||||||| |||||| ||| |||||    
T  41724237 aaggatagctgatgaaaacagtttata 41724211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 42817201 - 42817247
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||||||  ||||||| ||||| ||||||||||||||||||||||    
T  42817201 agagcttatggaaacagcatatgacatgtccataagttgttttcagc 42817247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 43115166 - 43115056
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||| ||| |||| ||||||| ||||  ||||| ||||||| |||||||||| ||||||||||| | ||| || ||||| || | ||||| | |||||    
T  43115166 acttgtgagattgtttggaagagtttatggaaacaacttatgacatgtccataacttgttttcagcttatttccataagctctcaatgatagttcatgaa 43115067  T
Q  196 agcagcttata 206  Q
    | || ||||||    
T  43115066 aacaacttata 43115056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 54180770 - 54180840
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||||||| |||||||||||||||||| ||| | |||  | ||||| ||||  |||||||||||||    
T  54180770 aaacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaa 54180840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 2719533 - 2719468
Alignment:
Q  141 tgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||||||| ||||| | |||||| ||| | |||| |||||||||||||| ||| |||||    
T  2719533 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttata 2719468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 20669244 - 20669171
Alignment:
Q  134 tatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    ||||| |||| |||||| ||||||| || | ||| || ||||| |||| |||||||||||||| ||||||||||    
T  20669244 tatgacatgttcataagctgttttccgcttatttacataagctctccaagatagcttatgaaaacagcttatat 20669171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 25453842 - 25453919
Alignment:
Q  120 ttataaaaacagcttatgata-tgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||| |||||||||||||| | ||| || ||| | |||||||| | |||||| |||||||||||||||| ||||||||    
T  25453842 ttatgaaaacagcttatgaaaatgttcacaagctcttttcagcttattttcataagctttccaggatagtttatgaaa 25453919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 31710868 - 31710957
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||| ||||||| ||| |||| || |||||||||| |  || |||||||| || | ||||| ||| |||| |||||||||    
T  31710868 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaaacagcttata 31710957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 31711123 - 31711212
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||| ||||||| ||| |||| || |||||||||| |  || |||||||| || | ||||| ||| |||| |||||||||    
T  31711123 agcttataaaaacaacttatgacatgcccatgagctgttttcagcttaattccaaaagctctctaagataggttaagaaaacagcttata 31711212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 3015822 - 3015866
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    ||||||||| |||||| ||||||| ||||||||||| ||||||||    
T  3015822 agagcttatgaaaacaacttatgacatgtccataagatgttttca 3015866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 16790356 - 16790438
Alignment:
Q  115 agagcttata--aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||||  |||| ||||||||| | ||||||||| |||||||||  | |||||| ||||| |||| ||||||||||||||    
T  16790356 agagcttatatgaaaatagcttatgaca-gtccataagctgttttcagtttattttcataagctatccaagatagcttatgaaa 16790438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 23785335 - 23785255
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||||   ||||||||||||||||||||| | ||| || ||||| |||| || ||||| ||||| ||| |||||    
T  23785335 aaacagcttatggcgtgtccataagttgttttcagcttgtttccataagctctccatgagagcttgtgaaaacagtttata 23785255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 25186051 - 25185999
Alignment:
Q  140 atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    |||||||||||||||||||| | | |||||| ||| |||||| ||||||||||    
T  25186051 atgtccataagttgttttcatcttattttcacaagatttccaagatagcttat 25185999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 31010491 - 31010447
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||||| ||||| ||||||| ||||||||||| ||||||||||    
T  31010491 agcttatagaaacaacttatgacatgtccataagctgttttcagc 31010447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 37)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 8177499 - 8177584
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagc 188  Q
    |||| ||||||||||||| ||  |||||||||||||||||||||||||||||||||||  | |||||| ||||| |||||||||||    
T  8177499 agaccgttcggaagagctcatggaaacagcttatgatatgtccataagttgttttcaggttattttcataagctctccaggatagc 8177584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 14295597 - 14295506
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||||| |  ||  ||||||| |||||||||||||| |||| |||||||||    
T  14295597 agagcttatgaaaacagcttatgatatgtcgataagctgttttcagcttacttctaaaagctctccaggatagcttacgaaaacagcttata 14295506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 112 - 206
Target Start/End: Original strand, 41957427 - 41957521
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||   ||||||||||||| |||||||||||||||||||| | | |||||| ||| | || |||||||||||||||| |||||||||    
T  41957427 ggaagagcttacggaaacagcttatgacatgtccataagttgttttcatcttattttcataagttctcaaggatagcttatgaaaacagcttata 41957521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 13604828 - 13604917
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctta 204  Q
    ||||||||| |||||||||||||| ||||||||| |||||||||| | | |||||| ||||| | || |||| ||||||||| |||||||    
T  13604828 agagcttatgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataagctcttcaagataacttatgaaaacagctta 13604917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 18543192 - 18543267
Alignment:
Q  131 gcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    |||||||| |||||||| ||||||||||||| || ||||| ||||| ||||||||||||||||||| || |||||||    
T  18543192 gcttatgacatgtccatgagttgttttcagc-ttatttcataagctctccaggatagcttatgaaaacaacttatat 18543267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 119 - 206
Target Start/End: Complemental strand, 11707142 - 11707055
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| |||| || |||||| ||||  |||||||||||||||| | |||||||||||| | || |||||||||||||| |||||||||    
T  11707142 cttatcaaaatagattatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatagcttatgaaaacagcttata 11707055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 13605363 - 13605429
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    ||||||||||||| |||| ||||| ||||||||||  | |||||| |||||||||||||||||||||    
T  13605363 aaacagcttatgaaatgtacataaattgttttcagtttattttcataagctttccaggatagcttat 13605429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 5531124 - 5531044
Alignment:
Q  116 gagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaag 197  Q
    |||||||| |||||| |||||||||||||||||||||||||| | | | ||| || ||||| |||||||| |||||||||||    
T  5531124 gagcttatgaaaacaacttatgatatgtccataagttgttttta-cttatttccagaagctctccaggattgcttatgaaag 5531044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 206
Target Start/End: Complemental strand, 2568761 - 2568658
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagct 202  Q
    ||||||||  ||||| ||||| |||||||||||||| || | |||||||| |||| ||| | ||||||  |||| |||| |||||||||||||| || ||    
T  2568761 agactgtttagaagaacttatgaaaacagcttatgacatattcataagttatttttagcttattttcattagctctccatgatagcttatgaaaacaact 2568662  T
Q  203 tata 206  Q
    ||||    
T  2568661 tata 2568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 206
Target Start/End: Original strand, 6587066 - 6587177
Alignment:
Q  95 tacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatga 194  Q
    ||||||| | |||||| |||||| |||| ||||||||||||||| | || |||||| ||||| |||| | |||||| ||| | ||||  |||||||||||    
T  6587066 tacttgttaaactgtttggaagaacttaaaaaaacagcttatgacaggttcataagctgtttacagcttattttcacaagttctccactatagcttatga 6587165  T
Q  195 aagcagcttata 206  Q
    || || ||||||    
T  6587166 aaacaacttata 6587177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 37611160 - 37611275
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttcc 180  Q
    |||||||  |||||||||||| ||| |||| |  ||||||||| |||||| ||| ||| |||| |||||| |||||||||  | ||| || ||||| |||    
T  37611160 tctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctcc 37611259  T
Q  181 aggatagcttatgaaa 196  Q
    | ||||||||||||||    
T  37611260 aagatagcttatgaaa 37611275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 196
Target Start/End: Original strand, 37787890 - 37788005
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttcc 180  Q
    |||||||  |||||||||||| ||| |||| |  ||||||||| |||||| ||| ||| |||| |||||| |||||||||  | ||| || ||||| |||    
T  37787890 tctactggcacaagtacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcaggttatttccataagctctcc 37787989  T
Q  181 aggatagcttatgaaa 196  Q
    | ||||||||||||||    
T  37787990 aagatagcttatgaaa 37788005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 8651325 - 8651422
Alignment:
Q  109 ttcggaagagcttataaaaacagcttatgat-atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||  ||||||||||| |  |||||||||||||||||||||| | ||| || |||| | |||| ||||||||||||| ||| |||||    
T  8651325 ttcggaagagcttatggaaacagcttataaacatgtccataagttgttttcagcatatttccataagc-tcccagaatagcttatgaaaacagtttata 8651422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 13781831 - 13781897
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttc 158  Q
    |||||||||| |||||||| || ||||||| || ||| ||||||||| |||| ||||||||||||||    
T  13781831 aagtacttgtgagactgtttggtagagcttgtagaaatagcttatgacatgtgcataagttgttttc 13781897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 206
Target Start/End: Complemental strand, 16889829 - 16889735
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||| |||| ||||||||||||  |||||| |||||||||||||||  | ||| || || || || || ||||||||||||| |||||||||    
T  16889829 ggaagagattatgaaaacagcttatactatgtctataagttgttttcagattatttccataaactctctagcatagcttatgaaaacagcttata 16889735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 192
Target Start/End: Complemental strand, 18700476 - 18700399
Alignment:
Q  114 aagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    ||||||||||  ||||| ||||||| ||||| |||||||||||||||| ||| | || |||||||| ||||||||||||    
T  18700476 aagagcttatggaaacaacttatgacatgtctataagttgttttcagc-tttatccataagctttcaaggatagcttat 18700399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 30217148 - 30217082
Alignment:
Q  140 atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||||||||||  |  | ||| || ||||| |||||||||||||||||||||||||||||    
T  30217148 atgtccataagttgttttaggtttatttccataagctctccaggatagcttatgaaagcagcttata 30217082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 26516498 - 26516457
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttt 156  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  26516498 agagcttatgaaaacagcttatgatatgtccattagttgttt 26516457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 10272413 - 10272501
Alignment:
Q  118 gcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||| ||||| ||||||| |||||  ||||||||||||||| | |||||| || || |||| ||| |||||||||| || ||||||    
T  10272413 gcttatagaaacaacttatgacatgtctgtaagttgttttcagcttattttcataaactctccaagatggcttatgaaaacaacttata 10272501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 196
Target Start/End: Original strand, 40205058 - 40205134
Alignment:
Q  120 ttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||| ||||||||||| | ||||||||||  |||||||||| | |||  | ||||| |||||||||||||||||||    
T  40205058 ttatataaacagcttataacatgtccataatctgttttcagcttatttctataagctctccaggatagcttatgaaa 40205134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 133 - 176
Target Start/End: Complemental strand, 6109556 - 6109513
Alignment:
Q  133 ttatgatatgtccataagttgttttcagcgttttttcaaaagct 176  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||    
T  6109556 ttatgatatgtccataagttgttttcagcttatttccaaaagct 6109513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 184
Target Start/End: Complemental strand, 14331448 - 14331389
Alignment:
Q  125 aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccagga 184  Q
    |||||||||||||| ||||||||||| || ||||||| | |||||| ||||| |||||||    
T  14331448 aaaacagcttatgacatgtccataagctgatttcagcttattttcataagctctccagga 14331389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 1899256 - 1899199
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||  |||||||||| |||| |||||||||| |||| |||||||||||||||||    
T  1899256 agactgttttgaagagcttacaaaa-cagcttatgacatgtgcataagttgttttcagc 1899199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 3237154 - 3237092
Alignment:
Q  145 cataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    |||||||||| |||||| | |||||| ||||| |  |||||||||||||||| ||||||||||    
T  3237154 cataagttgtgttcagcatattttcataagctctttaggatagcttatgaaaacagcttatat 3237092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 10907488 - 10907426
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttc 158  Q
    |||||| |||||||| |||||||||||| |||||| ||||||  ||||| ||||| |||||||    
T  10907488 acttgtgagactgtttggaagagcttatgaaaacaacttatgtcatgtcaataagctgttttc 10907426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 161
Target Start/End: Complemental strand, 12521631 - 12521573
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||||| |||||||||| || || | ||||||||||||| |||||| ||||||||||    
T  12521631 agactgtttggaagagcttgtagaagctgcttatgatatgttcataagctgttttcagc 12521573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 15074753 - 15074819
Alignment:
Q  140 atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||| |||||||||| | ||| || ||||||||||| ||| ||||||||| || ||||||    
T  15074753 atgtccataagctgttttcagcttatttccataagctttccagtataacttatgaaaacaacttata 15074819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 21768179 - 21768265
Alignment:
Q  118 gcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctta 204  Q
    |||||| |||||||||||||| ||||||||| | |||||||| | | |||||  ||||| | || |||| ||||||||| |||||||    
T  21768179 gcttatgaaaacagcttatgacatgtccatacgctgttttcaacttattttcgtaagctcttcaagataacttatgaaaacagctta 21768265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 192
Target Start/End: Original strand, 36774677 - 36774763
Alignment:
Q  106 ctgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    ||||| ||||||||||||  |||| |||||||| ||||||  ||| || ||||||| | ||| || ||||| |||||||||||||||    
T  36774677 ctgtttggaagagcttatggaaacggcttatgacatgtcctaaagatggtttcagcttatttccataagctctccaggatagcttat 36774763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 40335907 - 40335941
Alignment:
Q  172 aagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||| ||||||||||||||||||||||||    
T  40335907 aagctttccaagatagcttatgaaagcagcttata 40335941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 7319013 - 7319078
Alignment:
Q  141 tgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||||||| ||||| | |||||| ||| | |||| |||||||||||||| ||| |||||    
T  7319013 tgtccataagttgttctcagcttattttcataagttctccaagatagcttatgaaaacagtttata 7319078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 206
Target Start/End: Complemental strand, 18906407 - 18906342
Alignment:
Q  141 tgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||||||||||||| | |||  | ||||||| || |||||||||||||| ||| |||||    
T  18906407 tgtccataagttgttttcagcttatttcgataagcttttcaagatagcttatgaaaacagtttata 18906342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 39248207 - 39248146
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||| |||||||| || ||| ||||||||||||||||||||  ||| |||||| ||||||||    
T  39248207 ttgtgagactgtttgggagaacttataaaaacagcttatgacttgttcataagctgttttca 39248146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 1019445 - 1019489
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||||||||||| ||||||||  ||| ||||||||||||||||    
T  1019445 agagcttataaaaatagcttatgccatggccataagttgttttca 1019489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 4014433 - 4014493
Alignment:
Q  145 cataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    |||||| |||||||||| | |||||| ||| | |||| |||||||||||||| ||||||||    
T  4014433 cataagctgttttcagcttattttcataagttctccaagatagcttatgaaaacagcttat 4014493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 11457208 - 11457148
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttt 156  Q
    |||||| ||||||||  |||||||||||  ||||| ||||||| ||||||||||| |||||    
T  11457208 acttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccataagctgttt 11457148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Complemental strand, 29363099 - 29363055
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    ||||||||| |||||| ||||||| ||| ||||||||||||||||    
T  29363099 agagcttatgaaaacaacttatgacatgcccataagttgttttca 29363055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 206
Target Start/End: Complemental strand, 4966267 - 4966156
Alignment:
Q  95 tacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatga 194  Q
    ||||||| ||||||||  | |||||||||| ||||  |||||||||||||||||||||||||||||  | ||| || ||||| | |||||| ||||||||    
T  4966267 tacttgtgagactgtttaggagagcttatagaaaccacttatgatatgtccataagttgttttcagtttatttccataagctcttcaggatggcttatga 4966168  T
Q  195 aagcagcttata 206  Q
    || |||||||||    
T  4966167 aaacagcttata 4966156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 33894737 - 33894642
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaa-aagctttccaggatagctta 191  Q
    |||||| |||||||| |  ||||||||| |||||||| ||||| |||||||||||||||||||||| || |||||| || |||||||||||||||||    
T  33894737 acttgtgagactgtttgtgagagcttatgaaaacagcatatgacatgtccataagttgttttcagc-ttatttcaataaactttccaggatagctta 33894642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 206
Target Start/End: Complemental strand, 9038210 - 9038112
Alignment:
Q  107 tgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| ||||| |||||||||||||||||||| |||| ||||| ||||||||||| | |||||| ||| | |||| ||||| |||||||| ||| |||||    
T  9038210 tgttcagaagaacttataaaaacagcttatgacatgttcataa-ttgttttcagcttattttcacaagttctccatgatagtttatgaaaacagtttata 9038112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 28691798 - 28691895
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||| |||||||||||| || ||||| ||||||||||||||  ||||||||| ||||| ||||  | |||||| ||| | |||||||||||||||||||    
T  28691798 ttgtgagactgttcgga-gatcttatgaaaacagcttatgacttgtccataaattgttatcagtttattttcataagatctccaggatagcttatgaaa 28691895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 46082127 - 46082054
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagc 188  Q
    ||||||||| |||||| ||||||| ||| |||||||||||||||||| | |||||| ||||| ||||| |||||    
T  46082127 agagcttatgaaaacaacttatgacatgaccataagttgttttcagcttattttcataagctctccagaatagc 46082054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 47134736 - 47134813
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    ||||| || ||||||| ||||||| | |||||||||||||||||||| | |||||| |||||||| || |||||||||    
T  47134736 agagcgtacaaaaacaacttatgacacgtccataagttgttttcagcttattttcataagctttcaagaatagcttat 47134813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 34950105 - 34950176
Alignment:
Q  90 acaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||| |||||| |||||||| |||||||||||| |||||| ||| ||||| || ||||| |||||||||||    
T  34950105 acaagcacttgtgagactgttgggaagagcttatgaaaacatcttttgatacgttcataaattgttttcagc 34950176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 24363605 - 24363671
Alignment:
Q  140 atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||||||||| | ||| || || || ||||||||||||||||||| || ||||||    
T  24363605 atgtccataagttgttttcagcttatttccataacctctccaggatagcttatgaaaacaacttata 24363671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 9423591 - 9423662
Alignment:
Q  133 ttatgatatgtccataagttgttttcagcgttttttcaa-aagctttccaggatagcttatgaaagcagctta 204  Q
    |||||| |||| ||||||||||||||||| || |||||| ||||| ||||||||||||||| ||| |||||||    
T  9423591 ttatgacatgttcataagttgttttcagc-ttatttcaagaagctctccaggatagcttattaaaacagctta 9423662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 18749800 - 18749888
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    |||||| |||||||||| || |||| ||||||  ||||||||| | ||| || ||| |||||  |||||||||||||| ||||||||||    
T  18749800 cttatagaaacagcttacgacatgttcataagcagttttcagcttatttccataagttttccgtgatagcttatgaaaacagcttatat 18749888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 20553213 - 20553149
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcag 160  Q
    |||||| ||||||||| | |||||||||  |||||||||| || |||| ||||||||||||||||    
T  20553213 acttgtgagactgttcaggagagcttatggaaacagcttacgacatgttcataagttgttttcag 20553149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 39334296 - 39334192
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagct 202  Q
    |||||||| || |||| ||||  |||||  |||||| ||||||||||||||  |||||| | ||| || |||||  |||||||||||| ||||| |||||    
T  39334296 agactgtttggtagagtttatggaaacaatttatgacatgtccataagttgcattcagcttatttccataagctcgccaggatagcttttgaaaacagct 39334197  T
Q  203 tatat 207  Q
    |||||    
T  39334196 tatat 39334192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 39345582 - 39345470
Alignment:
Q  95 tacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatga 194  Q
    ||||||| |||||||| || |||| | ||  |||||| |||||| |||||||||||||| ||||||| | ||| || ||| |   ||||||||||| |||    
T  39345582 tacttgtgagactgtttggtagagttcatggaaacagtttatgacatgtccataagttgctttcagcttatttccataaggtcgtcaggatagcttttga 39345483  T
Q  195 aagcagcttatat 207  Q
    || ||||||||||    
T  39345482 aaacagcttatat 39345470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 25596118 - 25596043
Alignment:
Q  121 tataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||||||||||||| | ||   ||||||||||||| | | |||||| ||||| |||| ||||||||||||||    
T  25596118 tataaaaacagcttatgacaagttactaagttgttttcaacttattttcataagctctccaagatagcttatgaaa 25596043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Original strand, 48157082 - 48157145
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||| |||||||| || |||||||||| ||||| ||||||  ||||||||||| ||||||||||    
T  48157082 ttgtgagactgtttgggagagcttatagaaacaacttatgccatgtccataagctgttttcagc 48157145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 206
Target Start/End: Original strand, 425812 - 425894
Alignment:
Q  124 aaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||||||| |||| |||||| | ||| |||| | ||||||   ||| |||| ||||| ||||||||||||||||||    
T  425812 aaaaacagcttatgacatgttcataagctatttccagcttattttcactggctctccatgatagtttatgaaagcagcttata 425894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 514825 - 514767
Alignment:
Q  148 aagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| |||||||| | |||| | ||||| ||||||||||||||||||| |||||||||    
T  514825 aagttattttcagcttattttgacaagctctccaggatagcttatgaaaacagcttata 514767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 196
Target Start/End: Complemental strand, 5276339 - 5276241
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||| |||||| |  |||||||||  ||||| ||||||| || | ||| ||||||||||| | | ||||||  || |||||||||||||||||||||    
T  5276339 ttgtaaaactgtttgagagagcttatgcaaacatcttatgacatcttcattagttgttttcaccttattttcattagttttccaggatagcttatgaaa 5276241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 196
Target Start/End: Complemental strand, 30496796 - 30496714
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaa-aagctttccaggatagcttatgaaa 196  Q
    ||||||||| |||||||||||||  ||| || ||||||||||||||| | ||||||| ||||| ||| ||| || ||||||||    
T  30496796 agagcttatgaaaacagcttatggcatgcccgtaagttgttttcagcttattttcaataagctatccgggacagtttatgaaa 30496714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Original strand, 40251987 - 40252029
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||||||||| || |||| ||||||||||||||||||||||    
T  40251987 cttataaaaacatctgatgacatgtccataagttgttttcagc 40252029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 44822025 - 44821959
Alignment:
Q  140 atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||| |||||||||||||| | | |||||| ||| | ||||| ||||||||||||| |||||||||    
T  44822025 atgtcaataagttgttttcaacttattttcataagttctccagaatagcttatgaaaacagcttata 44821959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 1914502 - 1914465
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttt 156  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  1914502 cttataaaaacagcttatgacatgttcataagttgttt 1914465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 30723068 - 30723109
Alignment:
Q  165 ttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||| |||||||||||||||||||  ||||||||    
T  30723068 ttttcaaaagctctccaggatagcttatgaaaatagcttata 30723109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 44151477 - 44151550
Alignment:
Q  133 ttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||| ||||||||||| |||||||||| | ||| || ||||||| || ||||| |||||||| || ||||||    
T  44151477 ttatgacatgtccataagatgttttcagcttatttccataagcttttcaagatagtttatgaaaacaacttata 44151550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 159
Target Start/End: Original strand, 6857318 - 6857362
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||||||  ||||||||||||  ||||||||||||||||||||    
T  6857318 agagcttatggaaacagcttatgccatgtccataagttgttttca 6857362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 12242353 - 12242289
Alignment:
Q  97 cttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||| |||||||| |  |||||||||  |||| |||||||||||| | ||||||||||||||||    
T  12242353 cttgtgagactgtttgagagagcttatgcaaacggcttatgatatgcctataagttgttttcagc 12242289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 28689442 - 28689508
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttat 192  Q
    ||||||||||||| |||||||||||||||||||||| | |||||| |||||||||| ||||||||||    
T  28689442 aaacagcttatgacatgtccataagttgttttcagcttattttcataagctttccaagatagcttat 28689508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 27140558 - 27140477
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    ||||||||||||| |||||||||||||||||||||| | ||| || ||||| |||| |||||||||| ||| ||||||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttatttgcataagctctccatgatagcttataaaaacagcttatat 27140477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 207
Target Start/End: Original strand, 11639393 - 11639487
Alignment:
Q  113 gaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    ||||||||||| |||||||||||||| ||||||||||| |||||| ||| | |||||| ||||| || || ||| |||||| || ||| ||||||    
T  11639393 gaagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataagctctctagaataacttatgcaaacagtttatat 11639487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 25479671 - 25479581
Alignment:
Q  116 gagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||| |||| || |||||| |||| ||| ||||||||||||| | |||||| ||||| || |||||||||||||||| || ||||||    
T  25479671 gagcttatgaaaatagattatgacatgttcattagttgttttcagcttattttcataagctctctaggatagcttatgaaaacaacttata 25479581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 7262497 - 7262578
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||||||||||||||| ||| |||| |||||| |||||||| | | ||| || ||||| | |||||||||||||||||    
T  7262497 agagcttataaaaacagcttttgacatgttcataagctgttttcaccttatttccacaagctcttcaggatagcttatgaaa 7262578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 38170650 - 38170715
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||| |||||| | || ||||||||| |||||||||||||| |||| |||||||||||||||||    
T  38170650 acttgtgagactgcttgggagagcttatgaaaacagcttatgacatgttcataagttgttttcagc 38170715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 6279465 - 6279409
Alignment:
Q  140 atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||||||||||||||||||| ||| || ||||| || ||||||||||||||||    
T  6279465 atgtccataagttgttttcagcgtatttccataagctctctaggatagcttatgaaa 6279409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 44422790 - 44422699
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||| |||| ||||||||| ||||||||||| ||  | |||| | |||||| ||||| ||||||||||||||| |||  ||||||||    
T  44422790 agagcttatgaaaatagcttatgacatgtccataagctgactacagcttattttcataagctctccaggatagcttataaaaatagcttata 44422699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 206
Target Start/End: Complemental strand, 4622203 - 4622093
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||| |||||||| |||||| || ||   |||| ||||||| ||||||||||| |||||| ||| | |||||| ||||| |||| |||||| |||| |    
T  4622203 acttgttagactgtttggaagatctaatgggaacatcttatgacatgtccataagctgtttttagcttattttcacaagctctccaagatagcatatgga 4622104  T
Q  196 agcagcttata 206  Q
    | |||||||||    
T  4622103 aacagcttata 4622093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 195
Target Start/End: Original strand, 26461910 - 26462000
Alignment:
Q  105 actgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||| || ||||||||| |||||| | ||||  ||||||||  |||||||||||| | |||||| ||||| | ||||||||||||||||    
T  26461910 actgtttggcagagcttatgaaaacaacatatggcatgtccatgggttgttttcagcttattttcataagctctgcaggatagcttatgaa 26462000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 206
Target Start/End: Complemental strand, 34290322 - 34290236
Alignment:
Q  120 ttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||| |||| ||||||||| || | ||||||||||||||||| | |||||| ||| | | || |||||||||||||| |||||||||    
T  34290322 ttattaaaaaagcttatgacatattcataagttgttttcagcttattttcataagttcttcaagatagcttatgaaaacagcttata 34290236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 39347971 - 39348037
Alignment:
Q  140 atgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||||||||| | ||| || ||||||| |||||||| |||||||| || ||||||    
T  39347971 atgtccataagttgttttcagcttatttccataagctttgcaggatagtttatgaaaacaacttata 39348037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 4549303 - 4549230
Alignment:
Q  133 ttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||| ||||| |||||||||||||||| | ||| || ||||| ||| |||||| || |||||||||||||||    
T  4549303 ttatgacatgtctataagttgttttcagcttatttccataagctatcctggatagtttgtgaaagcagcttata 4549230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 27146015 - 27145966
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||||  ||||||||||||| ||||||||||||| ||||||||    
T  27146015 ggaagagcttatggaaacagcttatgacatgtccataagttattttcagc 27145966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 46504174 - 46504243
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||| |||| ||||||||||| ||||||||| |||||| | | |||||||||| |||||| ||||||||    
T  46504174 aagtatttgtgagactgttcggtagagcttatgaaaacaacctttgatatgtccgtaagttattttcagc 46504243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 7136976 - 7137068
Alignment:
Q  114 aagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||| ||||| ||||  |||||||| || | |||||||| |||||||| | |||||| ||| | |||| |||||||||||||| |||||||||    
T  7136976 aagaacttatgaaaatcgcttatgacatattcataagttattttcagcttattttcataagttctccaagatagcttatgaaaacagcttata 7137068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 10199397 - 10199477
Alignment:
Q  125 aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    |||| ||||||||| |||| ||||||||||||||||| | |||||| ||||| || |  |||||||||||||  |||||||    
T  10199397 aaaatagcttatgacatgttcataagttgttttcagcttattttcataagctctctaaaatagcttatgaaaaaagcttat 10199477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 188
Target Start/End: Complemental strand, 15361114 - 15361058
Alignment:
Q  132 cttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagc 188  Q
    |||||| ||||| ||||||||||||||||| | |||||| ||||| |||||||||||    
T  15361114 cttatgctatgttcataagttgttttcagcttattttcataagctctccaggatagc 15361058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 21012870 - 21012790
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||||| ||||| ||||| |||||||||| | |||||  |||||||| |||||| ||||| ||| || ||||||    
T  21012870 aaacagcttatgacatgtcgataagatgttttcagcttgttttcgtaagctttctaggataacttatcaaaacatcttata 21012790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 207
Target Start/End: Original strand, 39270404 - 39270496
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    ||||||||| |||||||||| ||  ||||||||||| |||||||| | | |||||| | ||| || | | |||||||||||| ||||||||||    
T  39270404 agagcttatgaaaacagcttttggcatgtccataagctgttttcaacttattttcatatgctctctatggtagcttatgaaaacagcttatat 39270496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 44453104 - 44453199
Alignment:
Q  95 tacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataa-gttgttttcagcgttttttcaaaagctttccaggatagctt 190  Q
    |||||||| |||||||||  |||| |||| |||||| ||||||||||||| |||| |||||||||||| | |||||| ||||| | || ||||||||    
T  44453104 tacttgtacgactgttcgacagagtttatgaaaacatcttatgatatgtctataaggttgttttcagc-tattttcataagctcttcatgatagctt 44453199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 161
Target Start/End: Original strand, 15064825 - 15064860
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15064825 aaacaacttatgatatgtccataagttgttttcagc 15064860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 17420313 - 17420250
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||| ||||||||  ||||||||||| |||||| ||||| | |||||||||| |||||||||    
T  17420313 acttgttagactgttttgaagagcttatgaaaacaacttattacatgtccataaattgttttca 17420250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 27963351 - 27963430
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||  |||||||||||| |||||||||||||||||| ||| | |||  | ||||| ||||  |||||||||||||    
T  27963351 agcttatattaacagcttatgacatgtccataagttgtttttagcttatttatataagctctccataatagcttatgaaa 27963430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 32515401 - 32515464
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||| |||||||| || |||||||||  ||||||| ||||| ||||| ||||||||||||||    
T  32515401 acttgtgagactgtttgggagagcttatggaaacagcgtatgacatgtcaataagttgttttca 32515464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 38001704 - 38001641
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||| |||||||| || ||| ||||| ||||||||||||||  ||| |||||||||||||||||    
T  38001704 ttgtgagactgtttgggagaacttatgaaaacagcttatgacctgttcataagttgttttcagc 38001641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 44928151 - 44928214
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    |||||||||| |||| |||||| |||||| ||||| ||||||| ||| || |||||||||||||    
T  44928151 acttgtaagattgtttggaagaacttatagaaacaacttatgacatgcccgtaagttgttttca 44928214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 45205152 - 45205113
Alignment:
Q  122 ataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  45205152 ataaaaacaacttatgatatgtccctaagttgttttcagc 45205113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 6262829 - 6262787
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgtttt 157  Q
    ||||||||| |||| | ||||||||||||||||||||||||||    
T  6262829 agagcttatgaaaataacttatgatatgtccataagttgtttt 6262787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 47598428 - 47598490
Alignment:
Q  143 tccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    ||||||||||||||||||| | ||  || ||||| ||||||||||||||||||| || |||||    
T  47598428 tccataagttgttttcagcttgttgccataagctctccaggatagcttatgaaaacaacttat 47598490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 6292574 - 6292493
Alignment:
Q  125 aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||| |||| |||||| |||||||||| | |||||| ||||| ||||  |||| ||| ||||  ||||||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataagctctccaaaatagtttacgaaaatagcttata 6292493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 11695941 - 11695880
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatag 187  Q
    |||||| |||||| ||||||||||| |||||||| | | |||||| ||||||||||| ||||    
T  11695941 aaacagtttatgacatgtccataagctgttttcaacttattttcataagctttccagaatag 11695880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 15579592 - 15579527
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||| ||||||||| || ||||||| |  ||||| ||||||| |||||||||||||||| |||||    
T  15579592 acttgcaagactgtttgggagagcttgtggaaacaacttatgacatgtccataagttgttctcagc 15579527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 196
Target Start/End: Complemental strand, 19389976 - 19389911
Alignment:
Q  132 cttatgatatgtccataagttg-ttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||||||| ||||||||| |||| ||| | |||||| ||||| |||| ||||||||||||||    
T  19389976 cttatgatatgttcataagttgttttttagcttattttcacaagctctccaagatagcttatgaaa 19389911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 26184828 - 26184759
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    ||||||||||||| ||||||||||| |||||||||  | ||| || ||||| |||||||||  |||||||    
T  26184828 aaacagcttatgacatgtccataagctgttttcagattatttccataagctctccaggataatttatgaa 26184759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Complemental strand, 35017649 - 35017576
Alignment:
Q  133 ttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||| ||||||||||||| |||||| | | ||| || ||||| ||||||| ||||||||||| |||| ||||    
T  35017649 ttatgacatgtccataagttattttcaacttatttccataagctctccaggacagcttatgaaaacagcatata 35017576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 193
Target Start/End: Original strand, 46252678 - 46252739
Alignment:
Q  132 cttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatg 193  Q
    ||||||| |||| ||||||||||||||||  | |||||| ||||| |||| |||||||||||    
T  46252678 cttatgacatgttcataagttgttttcaggttattttcataagctctccaagatagcttatg 46252739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 203
Target Start/End: Original strand, 4202131 - 4202218
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagctt 203  Q
    ||||||||||||| |||||||||| ||||||||||| | |||||||| | |||||  ||||| | |  |||||||| ||||| ||||||    
T  4202131 agagcttataaaa-cagcttatgacatgtccataagctattttcagcttattttcgtaagctctgccagatagcttttgaaaacagctt 4202218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 206
Target Start/End: Complemental strand, 6981584 - 6981492
Alignment:
Q  114 aagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||||| | |||  |||||  ||||| |||||||||||||||| | ||| || || || ||||| |||||||| |||| |||||||||    
T  6981584 aagagcttatagatacaatttatgtcatgtcaataagttgttttcagcatatttccataaactctccagaatagcttaggaaatcagcttata 6981492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 10233609 - 10233649
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatga 138  Q
    ||||||||||||| |||||| ||||| ||||||||||||||    
T  10233609 ttgtaagactgtttggaagaacttatgaaaacagcttatga 10233649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 12477280 - 12477312
Alignment:
Q  129 cagcttatgatatgtccataagttgttttcagc 161  Q
    |||||||||| ||||||||||||||||||||||    
T  12477280 cagcttatgacatgtccataagttgttttcagc 12477312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 14629964 - 14630036
Alignment:
Q  134 tatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||| ||||||||||||||||| | ||| || ||  | |||| ||||||||||||||  ||||||||    
T  14629964 tatgatatgttcataagttgttttcagcttatttccataaagtctccaagatagcttatgaaaatagcttata 14630036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 190
Target Start/End: Original strand, 28935838 - 28935930
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctt 190  Q
    |||| |||||||| || |||||||||| |  ||| |||||| ||||||||||||| |||| ||| | ||| || ||||| | |||||||||||    
T  28935838 ttgtgagactgtttgggagagcttatagagtcagtttatgacatgtccataagttttttttagcttatttccataagctcttcaggatagctt 28935930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 206
Target Start/End: Original strand, 34179882 - 34179942
Alignment:
Q  146 ataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||||||||||||||| ||| || || |||| |||||||| |||||||| ||| |||||    
T  34179882 ataagttgttttcagcgtatttccataaacttttcaggatagtttatgaaaacagtttata 34179942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 35669059 - 35669019
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    ||||| ||| ||||||||||||||||||||| |||||||||    
T  35669059 cttatgaaagcagcttatgatatgtccataaattgttttca 35669019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 42)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 161
Target Start/End: Original strand, 44606066 - 44606135
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||| ||||||| |||||| ||||| |||||| ||||||| ||||||||||||||||||||||    
T  44606066 aagtacttgtacgactgtttggaagaacttatgaaaacaacttatgacatgtccataagttgttttcagc 44606135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 5759531 - 5759645
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgt-tttcagcgttttttcaaaagctttccaggatagctt 190  Q
    |||||||||| |||||||| || |||||||||  |||||||||| || ||||||||||||||| ||||||| | |||||| || |  ||||| |||||||    
T  5759531 aagtacttgtgagactgtttgggagagcttatggaaacagctta-gacatgtccataagttgtgtttcagcttattttcacaaaccctccagaatagctt 5759629  T
Q  191 atgaaagcagcttata 206  Q
    |||||| |||||||||    
T  5759630 atgaaaacagcttata 5759645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 119 - 196
Target Start/End: Complemental strand, 8017521 - 8017444
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||| ||||||||||||||||||| ||||| |||||||| |||| |||||| ||| | |||| ||||||||||||||    
T  8017521 cttatgaaaacagcttatgatatgttcataatttgttttctgcgtattttcataagttctccaagatagcttatgaaa 8017444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 207
Target Start/End: Complemental strand, 11488366 - 11488276
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttatat 207  Q
    ||||||||| |||||| ||||||||  |  ||||||||||||||||| | ||| || || || ||||||||||||||||||||||||||||||    
T  11488366 agagcttatgaaaacaacttatgat--ggtcataagttgttttcagcttatttgcataatctctccaggatagcttatgaaagcagcttatat 11488276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 35378995 - 35379076
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||| ||||||||| ||||  ||| ||||||||||||||||| | |||||| ||||| |||| ||||||||||||||    
T  35378995 agagcttatgaaaacagctgatgacttgttcataagttgttttcagcttattttcataagctctccaagatagcttatgaaa 35379076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 9556330 - 9556239
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||||| |||||| || |||| |||||||||||| | ||||| | | |||||| |||||||| |||||||||||||||| ||| |||||    
T  9556330 agagcttatgaaaacaactaatgacatgtccataagtagatttcaacttattttcataagctttctaggatagcttatgaaaacagtttata 9556239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 206
Target Start/End: Original strand, 18179200 - 18179310
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaa 195  Q
    |||||||||  |||| ||||| | |||| |||||| |||| || |||||||| || | |||||||| | |||||  ||| | ||||||||||||||||||    
T  18179200 acttgtaagtttgtttggaagtgtttatgaaaacatcttaagacatgtccattagctattttcagcttattttcgtaagttctccaggatagcttatgaa 18179299  T
Q  196 agcagcttata 206  Q
    |||||||||||    
T  18179300 agcagcttata 18179310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 33192295 - 33192206
Alignment:
Q  113 gaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagct 202  Q
    ||||| ||||| ||||||| |||||| || |||||||| |||||||||| | | || | ||||| ||||||||||||||||||| |||||    
T  33192295 gaagaacttatgaaaacagtttatgacatatccataagctgttttcagcttatatttataagctctccaggatagcttatgaaaccagct 33192206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 29316741 - 29316845
Alignment:
Q  102 aagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagc 201  Q
    ||||| |||||| ||| || | ||||||||||||||| |||| |||||||| |||||||| | ||| || ||| | |||| ||||||| |||||| ||||    
T  29316741 aagacagttcgggagaactaacaaaaacagcttatgacatgttcataagttcttttcagcttatttccataagttctccaagatagctgatgaaaacagc 29316840  T
Q  202 ttata 206  Q
    |||||    
T  29316841 ttata 29316845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 206
Target Start/End: Complemental strand, 32821913 - 32821809
Alignment:
Q  102 aagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagc 201  Q
    ||||||||| ||||||| ||||| ||||| ||||||| ||||||||||| |||||||||  | |||  | ||||| |  |||||||||||||||| |||     
T  32821913 aagactgtttggaagagtttatagaaacaacttatgacatgtccataagctgttttcagtttatttctataagctctttaggatagcttatgaaaacagt 32821814  T
Q  202 ttata 206  Q
    |||||    
T  32821813 ttata 32821809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 196
Target Start/End: Original strand, 34652017 - 34652096
Alignment:
Q  117 agcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||||||| ||||| ||||||| ||||||||||| |||||||| | | ||| || ||||| |||| ||||||||||||||    
T  34652017 agcttatagaaacaacttatgacatgtccataagctgttttcaacttatttccataagctctccaagatagcttatgaaa 34652096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 43065429 - 43065510
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaa-aagctttccaggatagcttatgaaa 196  Q
    ||||||||| |||||| ||||||| |||||||||| ||||||||||| || |||||| ||||| |||| |||| |||||||||    
T  43065429 agagcttatgaaaacaacttatgacatgtccataaattgttttcagc-ttatttcaataagctctccacgataacttatgaaa 43065510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 5902509 - 5902574
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||| |||||||| |||||| ||||| |||||||||||||| |||| |||||  ||||||||||    
T  5902509 acttgtgagactgtttggaagaacttatgaaaacagcttatgacatgttcataaactgttttcagc 5902574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 11063591 - 11063518
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagct 176  Q
    |||||||| ||||||||||||  |||||  |||||| |||||||||||||||||| ||| | |||||| |||||    
T  11063591 agactgtttggaagagcttatggaaacatattatgacatgtccataagttgtttttagcttattttcataagct 11063518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 30538153 - 30538198
Alignment:
Q  116 gagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||    
T  30538153 gagcttatagaaacaacttatgacatgtccataagttgttttcagc 30538198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 43910995 - 43911068
Alignment:
Q  132 cttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    ||||||| |||| ||||||||||||||||| | || ||| |||||||||| |||||||| ||||| || |||||    
T  43910995 cttatgacatgttcataagttgttttcagcttattatcacaagctttccaagatagcttttgaaaacaacttat 43911068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 44269076 - 44269011
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||| |||  | |||||||| ||||||| ||||||| |||||||||| |||||||||||    
T  44269076 acttgtaagaccgttttggagagcttacaaaaacaacttatgacatgtccataaattgttttcagc 44269011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 196
Target Start/End: Original strand, 9530705 - 9530788
Alignment:
Q  112 ggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||||||  ||| |||| |||| ||||||||||||| |||| ||| |  ||||| ||||| |||||||||||||||||||    
T  9530705 ggaagagcttatggaaatagct-atgacatgtccataagttatttttagcttactttcataagctctccaggatagcttatgaaa 9530788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 18884977 - 18884913
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcag 160  Q
    ||||||||| ||||| || |||||||||| ||||||||||||| || ||||| || |||||||||    
T  18884977 acttgtaaggctgtttgggagagcttatagaaacagcttatgacatttccattagctgttttcag 18884913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 205
Target Start/End: Complemental strand, 40158843 - 40158719
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttcc 180  Q
    |||||||| | ||| |||||| |||||| | ||  || ||||| |||||||||||||| ||||  |||||||||||||||| |  || || ||||| |||    
T  40158843 tctactgacataagaacttgtgagactgattgggggaacttatgaaaacagcttatgacatgtttataagttgttttcagcttaattacataagctctcc 40158744  T
Q  181 aggatagcttatgaaagcagcttat 205  Q
    || ||| ||||||||| || |||||    
T  40158743 agaataacttatgaaaacaacttat 40158719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 9878649 - 9878704
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttc 158  Q
    |||||||  ||||||||||||  ||||| ||||||| |||||||||||||||||||    
T  9878649 agactgtagggaagagcttatggaaacaacttatgacatgtccataagttgttttc 9878704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 13234616 - 13234553
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttca 159  Q
    ||||||||||||||| |  || ||||| |||||||  |||||| ||||||||||||||||||||    
T  13234616 acttgtaagactgtttgagagtgcttacaaaaacacattatgacatgtccataagttgttttca 13234553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 32364710 - 32364765
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttca 170  Q
    ||||||||||||| ||||||||||  ||||||| ||||||||||||| | ||||||    
T  32364710 agagcttataaaaccagcttatgacgtgtccatgagttgttttcagcttattttca 32364765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 757552 - 757498
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgtttt 157  Q
    |||||||| || || |||||||||||||| || ||| ||||||||||||||||||    
T  757552 agactgtttgggagggcttataaaaacagattttgacatgtccataagttgtttt 757498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 161
Target Start/End: Complemental strand, 787419 - 787377
Alignment:
Q  119 cttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||| |||||||||||||| ||||||||||| ||||||||||    
T  787419 cttatgaaaacagcttatgacatgtccataagctgttttcagc 787377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 173
Target Start/End: Original strand, 1494425 - 1494483
Alignment:
Q  115 agagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaa 173  Q
    ||||||||| |||||||||||||| ||||||||||  |||||| ||| | |||||||||    
T  1494425 agagcttatgaaaacagcttatgacatgtccataaactgtttttagcttattttcaaaa 1494483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 10567171 - 10567057
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagctta 191  Q
    ||||||| || |||||||| || |||| || |  ||||||||||||| |||  |||||||||||||||||   |||||| ||||| ||||| |||| |||    
T  10567171 aagtactcgtgagactgtttgggagagattgtggaaacagcttatgacatgatcataagttgttttcagctaattttcacaagctctccagaatagttta 10567072  T
Q  192 tgaaagcagcttata 206  Q
    || || ||| |||||    
T  10567071 tggaaacagtttata 10567057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 17380648 - 17380578
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaa-aagctttccaggatagcttatgaa 195  Q
    ||||| ||| ||| ||||| ||||| |||||||||| ||||||||| |||||||| ||| |||||||||||    
T  17380648 aaacaacttgtgacatgtcaataagctgttttcagctttttttcaataagctttctagggtagcttatgaa 17380578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 158
Target Start/End: Original strand, 28677615 - 28677681
Alignment:
Q  92 aagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttc 158  Q
    |||||||  |||||||||| || ||| ||||| |||||||||||||| || | ||||||||||||||    
T  28677615 aagtactgctaagactgtttgggagaacttatgaaaacagcttatgacattttcataagttgttttc 28677681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 1939323 - 1939392
Alignment:
Q  127 aacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||| ||||||| ||||||||||| |||||||| | | ||| || ||||| ||||| |||||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttatgaaa 1939392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 3067346 - 3067439
Alignment:
Q  103 agactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||| |||||| ||||||||| |||||||||||| ||||||  |||||  ||||| ||| | |||||| || || | || ||||||||||||||    
T  3067346 agaccgttcgggagagcttatgaaaacagcttataatatgtatataagccgtttttagcttattttcataaactcttcaagatagcttatgaaa 3067439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 159
Target Start/End: Complemental strand, 7283076 - 7283043
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttca 159  Q
    ||||| ||||||||||||||||||||||||||||    
T  7283076 aaacaacttatgatatgtccataagttgttttca 7283043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 12313157 - 12313230
Alignment:
Q  120 ttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatg 193  Q
    |||| |||||||||||||  |||| ||||||||| ||||| | | |||||| ||||| |||| |||||||||||    
T  12313157 ttatgaaaacagcttatgccatgttcataagttgatttcaccttattttcataagctctccaagatagcttatg 12313230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 15866665 - 15866738
Alignment:
Q  133 ttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||||| ||||  ||||| |||||||||| | ||| || ||||| ||||||||||||||||||||  |||||||    
T  15866665 ttatgacatgtatataaggtgttttcagcttgtttacataagctctccaggatagcttatgaaagtggcttata 15866738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 193
Target Start/End: Original strand, 35993340 - 35993437
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatg 193  Q
    |||||| | |||||| || |||||| ||| |||||| ||||||  ||||||||| ||||||||||| | |||||| ||| | || | |||||||||||    
T  35993340 acttgtgatactgtttgggagagctgatataaacagtttatgacgtgtccataaattgttttcagcttattttcataagttctctatgatagcttatg 35993437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 42420078 - 42419997
Alignment:
Q  125 aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    |||| ||||||||  |||| ||||| |||||||||||   ||| || ||||| |||||||||||||||||||  ||||||||    
T  42420078 aaaaaagcttatgtcatgttcataaattgttttcagctcatttccataagctatccaggatagcttatgaaaatagcttata 42419997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 206
Target Start/End: Original strand, 42621364 - 42621445
Alignment:
Q  125 aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||| || ||| |||||  ||||||||||||||| | |||||| ||| | ||||| ||| ||||||||| |||||||||    
T  42621364 aaaacagtttttgacatgtctgtaagttgttttcagcttattttcacaagttctccagaataacttatgaaaacagcttata 42621445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 43456667 - 43456732
Alignment:
Q  96 acttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||||||| | |||||||| | |||||| || |||| ||||||||||  ||||||||||    
T  43456667 acttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgttttcagc 43456732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 206
Target Start/End: Original strand, 10563548 - 10563628
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttata 206  Q
    ||||||| ||||| ||||||||||| | |||||||| | |||||  ||||| | ||| ||||||||||||| || ||||||    
T  10563548 aaacagcctatgacatgtccataagctattttcagcttattttcttaagctcttcagcatagcttatgaaaacaacttata 10563628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 38767527 - 38767559
Alignment:
Q  12 tctactggcataatcacttgtgagactgtgaga 44  Q
    ||||||||||||| |||||||||||||||||||    
T  38767527 tctactggcataagcacttgtgagactgtgaga 38767559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 196
Target Start/End: Complemental strand, 41817254 - 41817178
Alignment:
Q  120 ttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    |||| |||||| ||||||| ||||  |||| ||||||||||| | ||| || ||||| |||||||||| ||||||||    
T  41817254 ttatgaaaacatcttatgacatgttgataatttgttttcagcttatttccataagctctccaggatagtttatgaaa 41817178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 44438828 - 44438908
Alignment:
Q  125 aaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaagcagcttat 205  Q
    |||||||||||||| |||| |||||  |||||||||| | ||| || ||| | ||||||||| ||||||||  ||||||||    
T  44438828 aaaacagcttatgacatgttcataacctgttttcagcttatttccacaagatctccaggataacttatgaagacagcttat 44438908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 206
Target Start/End: Complemental strand, 27701 - 27576
Alignment:
Q  81 tctactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttcc 180  Q
    |||||||| | | |||||| | |||||||| || |||||||||  ||| ||||||||| ||| | |||||||||||||||| | ||| || | |||| ||    
T  27701 tctactgacatatgtacttctgagactgtttgggagagcttatggaaatagcttatgacatggctataagttgttttcagcttatttccacacgcttacc 27602  T
Q  181 aggatagcttatgaaagcagcttata 206  Q
    | ||||| |||||||| || ||||||    
T  27601 aagatagtttatgaaaacaacttata 27576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 161
Target Start/End: Original strand, 10564 - 10642
Alignment:
Q  83 tactgagacaagtacttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataagttgttttcagc 161  Q
    |||||| | |||||||||| |||||||| |  | |||||||  ||||| || |||| ||||||||||||||||||||||    
T  10564 tactgacataagtacttgtgagactgtttgacaaagcttatgtaaacaactaatgacatgtccataagttgttttcagc 10642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 306406 - 306336
Alignment:
Q  126 aaacagcttatgatatgtccataagttgttttcagcgttttttcaaaagctttccaggatagcttatgaaa 196  Q
    ||||||||||||| ||| ||||||| |||||||||| |  || || ||||| || ||||||||||||||||    
T  306406 aaacagcttatgacatgcccataagctgttttcagcttacttacataagctctctaggatagcttatgaaa 306336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Complemental strand, 3547 - 3518
Alignment:
Q  132 cttatgatatgtccataagttgttttcagc 161  Q
    ||||||||||||||||||||||||||||||    
T  3547 cttatgatatgtccataagttgttttcagc 3518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 42684 - 42736
Alignment:
Q  98 ttgtaagactgttcggaagagcttataaaaacagcttatgatatgtccataag 150  Q
    ||||||||||||| ||||||| ||||  ||| ||||||||||||||| |||||    
T  42684 ttgtaagactgtttggaagagtttatggaaatagcttatgatatgtctataag 42736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University