View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_low_4 (Length: 560)
Name: NF2314_low_4
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-141; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 188 - 450
Target Start/End: Complemental strand, 7436415 - 7436153
Alignment:
| Q |
188 |
atatgttgagctgaaaaccaatacatttcataataacattgggtactaattgagttaatcaaagaaaatttaatgtgttatacaaaaatgagacatgtga |
287 |
Q |
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| T |
7436415 |
atatgttgagctgaaaaccaatacatttcataataacattgggtactaattgagttaatcaaagaaaatttaatgtgttatacaaaaatgagacatgtga |
7436316 |
T |
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| Q |
288 |
tagccataaaatatgtgacatgtgtccattgatcaagtagatatggaaatggaatcttgggaccaaagaagatcattgcctagctagctagattcatccc |
387 |
Q |
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| T |
7436315 |
taggcataaaatatgtgacatgtgtccattgatcaagtagatatggaaatggaatcttgggaccaaagaagatcattgcctagctagctagattcatccc |
7436216 |
T |
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| Q |
388 |
tcaggtgttctttgatcctacaacaaccatcaagatttctttgatcctactctttccctctac |
450 |
Q |
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| T |
7436215 |
tcaggtgtcctttgatcctacaacaaccatcaagatttctttgatcctactctttccctctac |
7436153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 7436583 - 7436449
Alignment:
| Q |
20 |
gaatagtgggtatgtgtccttccttcgtccttcagttccannnnnnnncactctctttaagggattccaagctggcttgtctttcattccgtaaactgtc |
119 |
Q |
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| T |
7436583 |
gaatagtgggtatgtgtccttccttcgtccttcagttccattttttttcactctctttaagggattccaagctggcttgtctttcattccgtaaactgtc |
7436484 |
T |
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| Q |
120 |
actggcctatgcacatggatgccactgattttgtt |
154 |
Q |
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| T |
7436483 |
actggcctatgcacatggatgccactgattttgtt |
7436449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 482 - 553
Target Start/End: Complemental strand, 7436121 - 7436050
Alignment:
| Q |
482 |
gtggaatgcattgctttgttattcttagcaccttttgataatacgtgggtcaacaaaagtttaacacctttg |
553 |
Q |
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| T |
7436121 |
gtggaatgcattgctttgttattcttagcaccttttgatgatacgtgggtcaacaaaagtttaacacctttg |
7436050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 405
Target Start/End: Complemental strand, 7450429 - 7450295
Alignment:
| Q |
268 |
tacaaaaatgagacatgtgatagccataaaatatgtgacatgtgtccattgatcaagtagatatggaaatggaatcttgggaccaaagaa----gatcat |
363 |
Q |
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| T |
7450429 |
tacaaaaataagacatgtgataggcataaaatatgggacatgtgtccatgg---gag-ggaagtggaaatggaatcttgggaccaaagaaaatcgatcat |
7450334 |
T |
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| Q |
364 |
tgcctagctagctagattcatccctcaggtgttctttgatcc |
405 |
Q |
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| T |
7450333 |
tgcctagctag---gtttaatctctcaggtgttctttgatcc |
7450295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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