View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_low_5 (Length: 558)
Name: NF2314_low_5
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 322 - 540
Target Start/End: Original strand, 55652507 - 55652733
Alignment:
| Q |
322 |
ttacgtaaattatcatcaaaataaagttgaagccaatgttgctctgaaagaatgatagtaatagcaagtaatcagcattcaacataattaatggaaagat |
421 |
Q |
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| T |
55652507 |
ttacgtaaattatcatcaaaataaagttgaagccaatgttgctctgaaagaatgatagtaatagtaagtaatcagcattcaacataattaatggaaagat |
55652606 |
T |
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| Q |
422 |
atgtgttac--------tacttgccaatattatcctattaattctcatgatgactaacactctaacagttatctatgacatgtatacactaattgaaaat |
513 |
Q |
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| T |
55652607 |
atgtgttactaacttactacttgccaatattatcctattaattctcatgatgactaacactctaacagttatctatgacatgaatacactaattgaaaat |
55652706 |
T |
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| Q |
514 |
atttttcaattaattcttagattcctt |
540 |
Q |
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| T |
55652707 |
atttttcaattaattcttagattcctt |
55652733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 169 - 299
Target Start/End: Original strand, 55652348 - 55652483
Alignment:
| Q |
169 |
agttatctccaaagaaggcaaatggatcctctaatgttgttataaaggggacagaaggataatt-----nnnnnnnnnnttatttagtttagttgaggtc |
263 |
Q |
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| T |
55652348 |
agttatctccaaagaaggcaaatggatcctctaatgttgtaataaaggggacagaaggataattaaaaaaaaaaaaaaattatttagtttagttgaggtc |
55652447 |
T |
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| Q |
264 |
ttcctaaatgtggagtgagaaaattgtgctagagac |
299 |
Q |
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| T |
55652448 |
ttcctaaatgtggagtgagaaaattgtgctagagac |
55652483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 7 - 115
Target Start/End: Original strand, 55652185 - 55652294
Alignment:
| Q |
7 |
gtgagatgaaagtctattgcaattttccccattcatttaaag-atggagaaaaagaatttnnnnnnntatatatatttaaaggtagagatgtatgtggac |
105 |
Q |
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| T |
55652185 |
gtgacatgaaagtctgttgcaattttccccattcatttaaaggatggagaaaaagaatttaaaaaaatatatatatttaaaggtagagatgtatgtggac |
55652284 |
T |
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| Q |
106 |
atttattcct |
115 |
Q |
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| T |
55652285 |
atttattcct |
55652294 |
T |
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