View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2314_low_9 (Length: 397)
Name: NF2314_low_9
Description: NF2314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2314_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 391
Target Start/End: Complemental strand, 28536114 - 28535743
Alignment:
| Q |
20 |
aagaattggtctgtagttttgtgagttaatcctaggaaaggaaaaagaataacctgtaaaggtgtttgactatacactatgtgtttctgtaactatcaac |
119 |
Q |
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| T |
28536114 |
aagaattggtctgtagttttgtgagttaatcctaggaaaggaaaaagaataacctgtaaaggtgtttgactatacactatgtgtttctgtaactatcaac |
28536015 |
T |
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| Q |
120 |
catttcaaaattttctattttttaatttacatctcatcctaatggctagtagaatgtgacagactcaaagtaatcatcagtttctcaaatggtaagattc |
219 |
Q |
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| T |
28536014 |
catttcaaaattttctattttttaatttacatctcatcctaatggctagtagaatgtgacagactcaaagtaatcatcagtatctcaaatggtaagattc |
28535915 |
T |
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| Q |
220 |
tccttcatggcaagaaaagatccaacaatttttcctccgacatcagggaactcttcttgatcgggaagtgatctgactttcccctttcgatcaacatata |
319 |
Q |
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| T |
28535914 |
tccttcatggcaagaaaagatccaacaatttttcctccgacatcagggaactcttcttgatcgggaagtgatctgactttcccctttcgatcaacatata |
28535815 |
T |
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| Q |
320 |
cagggtattttagtagatgccctctcatctctgtcacatcatttgctgcaaattgtttccagttcatctcac |
391 |
Q |
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| T |
28535814 |
cagggtattttagtagatgccctctcatctctgtcacatcatttgctgcaaattgtttccagttcatttcac |
28535743 |
T |
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Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 204 - 386
Target Start/End: Original strand, 12689571 - 12689753
Alignment:
| Q |
204 |
tcaaatggtaagattctccttcatggcaagaaaagatccaacaatttttcctccgacatcagggaactcttcttgatcgggaagtgatctgactttcccc |
303 |
Q |
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| T |
12689571 |
tcaaatggttagattctcttgaatggcaataaatgatcccactatctttcctcccacatcaggaaactcttcatgaccaggaagaggtctaaccttaccc |
12689670 |
T |
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| Q |
304 |
tttcgatcaacatatacagggtattttagtagatgccctctcatctctgtcacatcatttgctgcaaattgtttccagttcat |
386 |
Q |
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|||| |||||| | ||||||||| ||||||| |||||||||||||||||| || || |||| || |||||||||||||||||| |
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| T |
12689671 |
tttctatcaacttctacagggtactttagtaaatgccctctcatctctgtgacgtcgtttgatgaaaattgtttccagttcat |
12689753 |
T |
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