View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2315_low_10 (Length: 252)
Name: NF2315_low_10
Description: NF2315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2315_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 7035868 - 7036096
Alignment:
| Q |
13 |
aaaatacaaatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaacca |
112 |
Q |
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| T |
7035868 |
aaaatacagatctttcccatgaaagacacttaaaataatacagttccctccagatgaaataatatgtgacactacagcccattttaatgtatataaacca |
7035967 |
T |
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| Q |
113 |
actggtgagcaaatcacctaaagccannnnnnnnnnnnnnagaattgtc-atgtatcatccagaaaatctcacttgaacaccata-----ttattttatt |
206 |
Q |
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|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7035968 |
actggtgagcaaatcacctaaagccatttttttctttttcagaattgtcaatgtatcatccagaaaatctcacttgaacaccatattattttattttatt |
7036067 |
T |
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| Q |
207 |
ttattttgggtgtggagttggttgggttg |
235 |
Q |
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| T |
7036068 |
ttattttgggtgtggagttggttgggttg |
7036096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 7897108 - 7897326
Alignment:
| Q |
13 |
aaaatacaaatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaacca |
112 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7897108 |
aaaatacacatctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaacca |
7897207 |
T |
|
| Q |
113 |
actggtgagcaaatcacctaaagccannnnnnnnnnnnnnagaattgtc-atgtatcatccagaaaatctcacttgaacaccatattattttattttatt |
211 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
7897208 |
actggtgagcaaatcacctaaagccatttttttcttttttagaattgtcaatgtatcatccagaaaatctcactcgaacaccata-----ttattttatt |
7897302 |
T |
|
| Q |
212 |
ttgggtgtggagttggttgggttg |
235 |
Q |
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|||||||||||||||||||||||| |
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| T |
7897303 |
ttgggtgtggagttggttgggttg |
7897326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 29380357 - 29380425
Alignment:
| Q |
65 |
gatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagcaaatcacctaa |
133 |
Q |
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|||||||||||||| ||||||||| | || |||||||| |||||||||||||| |||||| ||||||| |
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| T |
29380357 |
gatgaaataatatgttacactacagtctatcttaatgtacataaaccaactggttagcaaaccacctaa |
29380425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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